Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00588 ATGGAGTTCTGGGGTGCTGAGGTTAAGGTTGGGGACATTGTCAAGGTCGACCCAAGCGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCACTTGGTGAGGCGAAGAAAGACAAAGCAAATGAACCTGTGGTTCTTTACTTGAAAGTTGGTGACCAGAAATTTGTTTTGGGAACCCTTTCCAGGGAGAAAATTCCTCAAATATCTCTTGAAATAGTTCTGGACAAGGAGTTTGAGCTTTCCCACAATTCAAAAAATGCCAGTGTCCATTTCTGTGGATACAAAGCTTATTACCCTGGTGAAGATAGTGAGGAAGATGATTTTACTGATAGTGATGAGGAGGGTCTCCCATTGATGAACAAAGAGAATGGAAAACCTGAAACAAAAGCTGAAGGCTTAAAGGTTTCTGAAGCTAAAAAATCTGAGGCCAAGAGTGGTGCATCAGCAAAACAAGTCAAGGTTGTTGATCCAAAGAAAGAAGAGGATGAATCTGATGAAGATGATGAACTTGGAAGTTCTGATGATGAGGAGATGGAGGATGCTGATAGTGATAGTGATGAGGAGAGTGAGAGTGATGAAGATGATGATGAACAAACCCCTCCTAAGAAGGCGGATCTGGGAAAGAAGAGACCCAATGAGTCTGCATCAAAGACTCCAGTTTCTACAAAGAAAGCAAAGAATGTTACTCCTGAAAAGACTGATGGTAAGAAAACTGTACATACAGCAACTCCTCACCCCGCAAAGAAAGGTGGAAAGACTCCAAGCAGTGAAGCCAAGGACCAGACTCCTAAGTCTGGTGGACAATTCTCTTGCAAAAGTTGTAGCAAGGCTTTCAACTCTGATGGTGGCCTGCGACAACATAACAAGGCTAAGCATGGTCAGTGA 885 0.4328 MEFWGAEVKVGDIVKVDPSEFEACIHLSQAALGEAKKDKANEPVVLYLKVGDQKFVLGTLSREKIPQISLEIVLDKEFELSHNSKNASVHFCGYKAYYPGEDSEEDDFTDSDEEGLPLMNKENGKPETKAEGLKVSEAKKSEAKSGASAKQVKVVDPKKEEDESDEDDELGSSDDEEMEDADSDSDEESESDEDDDEQTPPKKADLGKKRPNESASKTPVSTKKAKNVTPEKTDGKKTVHTATPHPAKKGGKTPSSEAKDQTPKSGGQFSCKSCSKAFNSDGGLRQHNKAKHGQ* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00588 294 MobiDBLite consensus disorder prediction 256 282 - -
Rops7g00588 294 MobiDBLite consensus disorder prediction 196 212 - -
Rops7g00588 294 MobiDBLite consensus disorder prediction 161 195 - -
Rops7g00588 294 MobiDBLite consensus disorder prediction 114 146 - -
Rops7g00588 294 MobiDBLite consensus disorder prediction 102 294 - -
Rops7g00588 294 FunFam Histone deacetylase HDT1 1 100 - -
Rops7g00588 294 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Rops7g00588 294 ProSitePatterns Zinc finger C2H2 type domain signature. 271 292 IPR013087 -
Rops7g00588 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 294 IPR013087 -
Rops7g00588 294 Gene3D Nucleoplasmin core domain 1 99 - -
Rops7g00588 294 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00588 Rops-Chr7 7524176 7527001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00588 1 292 C2H2 Transcription Factor Family AT5G03740 40.063 2.04e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00588 NPL 3.6e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00588 - - gmx:100792094 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00588 7 7524176 7527001 Rops7g00588 7 7524176 7527001 ECH