Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00575 ATGGAATTTGAGAATGAATCTCCTTATTCTTCCTCATCACAGTCTTCCATTCCTTCTCCAAGCCAACTCTCACCATGCAACCCAAATTCTCCATCAGATTCATCAAATGCACAGGCACAAAGCTCTCACAAGAGGAAAGCAGGAAGAAAGAAATTCAAGGAGACACGACACCCAGTGTATAGAGGGGTTCGGCAAAGAAATGGCAATAAATGGGTTTGTGAAGTAAGGGAACCAAACAAGAAATCAAGGATATGGCTTGGAACTTACCCTACACCAGAAATGGCAGCTATGGCACATGATGTGGCTGCCCTAGCACTTAGGGGCAGTTCAGCTATGTTCAATTTTCCTGATTCAGCTTCTCTTCTTCCAGTTGTAAAGTCATCTTCACCAGCAGATATAAGAGAAGCTGCATCAAAAACAGCAAAGACTTTGAGACCAAGCACCCCTTCTTCCTTGTCATCTAACTCATCCTCTGCTAAAAATTTATGGGTCCAGACAGACCCTTGTTTGATGGAATGTAAGAGCCAAGAAAAGGTACTTGAGGGTGAAGATCTTGTTAAAAGAACAACGTGTGCGCAAGAGAAGATTATGAATAATGATGGGTCCAAATCAGTGTTCTTTGATGAGGAGGCATTGTATAATATGCCAGGTTTTTTAGATAGTATGGCAGAGGGTCTTCTTATTACCCCACCTTCTATGAAGAGAGCATTGGATTGGGATGAAGTTGATTGTGAAACAGATCTCACTCTCTGGACAGACTAA 762 0.4213 MEFENESPYSSSSQSSIPSPSQLSPCNPNSPSDSSNAQAQSSHKRKAGRKKFKETRHPVYRGVRQRNGNKWVCEVREPNKKSRIWLGTYPTPEMAAMAHDVAALALRGSSAMFNFPDSASLLPVVKSSSPADIREAASKTAKTLRPSTPSSLSSNSSSAKNLWVQTDPCLMECKSQEKVLEGEDLVKRTTCAQEKIMNNDGSKSVFFDEEALYNMPGFLDSMAEGLLITPPSMKRALDWDEVDCETDLTLWTD* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00575 253 CDD AP2 60 118 IPR001471 GO:0003700|GO:0006355
Rops7g00575 253 MobiDBLite consensus disorder prediction 1 42 - -
Rops7g00575 253 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
Rops7g00575 253 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Rops7g00575 253 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Rops7g00575 253 MobiDBLite consensus disorder prediction 43 57 - -
Rops7g00575 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 252 IPR045277 GO:0003700
Rops7g00575 253 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Rops7g00575 253 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Rops7g00575 253 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Rops7g00575 253 MobiDBLite consensus disorder prediction 1 61 - -
Rops7g00575 253 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Rops7g00575 253 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00575 Rops-Chr7 7324442 7325203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00575 21 252 AP2-EREBP Transcription Factor Family AT5G51990 48.101 4.24e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops7g00575 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00575 - - gmx:100816109 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00575 7 7324442 7325203 Rops7g00575 7 7324442 7325203 ECH
Rops7g00575 7 7324442 7325203 Rops3g01058 3 14038230 14038913 PCT