Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00556 ATGGCCATGGTATATTGGATTCAGTGGGGGCTTAATTGGAACAAGTTGAAGGTGAATGATTTGATAATCTTTCTCTTTAACGGTTGTGAAAAAATGGCGGAAGAACATCGATGCCAGGCACAGCGCTTCTGCGCTAACAACTGCGGTTTCTTTGGTAGCCCTGCCACGCAGAACCTGTGTTCCAAGTGCTACCGTGATTTGCAGCTGAAGGAACAACAATCCTCATCGGCGAAACTTGTTCTCAATCAATCCCTAGCACCTTCGTCTCCGGCGGTGGTTTCTCAGCCGTCATCTTCGTCGCCGGAGCCGGTTGATCCGCCACGGGCCGCGGAGGAGGTGGCGAAACCGGCGCAGCAGAATCGTTGCATGACTTGCAGGAAGCGCGTGGGACTCACAGGGTTCAAGTGCAGGTGCGGGATGACACTGTGTGGGACCCACCGTTACCCTGAGCAACACGCGTGCGAGTTCGATTTCAAGGGGCTTGGGAGGGAGCAGATTGCGAAGGCGAACCCGGTGGTTAAGGCAGAGAAACTCGAGAAGATCTGA 546 0.5403 MAMVYWIQWGLNWNKLKVNDLIIFLFNGCEKMAEEHRCQAQRFCANNCGFFGSPATQNLCSKCYRDLQLKEQQSSSAKLVLNQSLAPSSPAVVSQPSSSSPEPVDPPRAAEEVAKPAQQNRCMTCRKRVGLTGFKCRCGMTLCGTHRYPEQHACEFDFKGLGREQIAKANPVVKAEKLEKI* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00556 181 PANTHER AN1-TYPE ZINC FINGER PROTEIN 42 181 - -
Rops7g00556 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 43 91 - -
Rops7g00556 181 SMART A20_3 41 65 IPR002653 GO:0003677|GO:0008270
Rops7g00556 181 SMART AN1_Zf_4 122 159 IPR000058 GO:0008270
Rops7g00556 181 Pfam A20-like zinc finger 44 65 IPR002653 GO:0003677|GO:0008270
Rops7g00556 181 Gene3D - 99 177 IPR035896 -
Rops7g00556 181 ProSiteProfiles Zinc finger A20-type profile. 38 72 IPR002653 GO:0003677|GO:0008270
Rops7g00556 181 FunFam Zinc finger AN1-type containing 6 95 177 - -
Rops7g00556 181 Gene3D - 31 98 - -
Rops7g00556 181 MobiDBLite consensus disorder prediction 88 115 - -
Rops7g00556 181 SUPERFAMILY AN1-like Zinc finger 109 176 IPR035896 -
Rops7g00556 181 Pfam AN1-like Zinc finger 122 158 IPR000058 GO:0008270
Rops7g00556 181 ProSiteProfiles Zinc finger AN1-type profile. 116 162 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00556 Rops-Chr7 7060654 7066119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00556 32 181 C2H2 Transcription Factor Family AT3G52800 48.634 1.64e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00556 - - gmx:106795660 238.039