Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00552 ATGGGTTTGAGAGAGTGCAATGTAGAGGACAAGAATCTGTGCCTTCAAAACCCAAATTTCATTGAATGGCTCAAACCATCATCCTCAGTATCATCATCTCCTACTTCTTCTATGACTCGGCATGGACTTTCCCGTGAAACTATCCAGTTTTTGCCCATGTTAAGTGAGTTCAACCATGGAAAGCCCTTGGAGGAAGACCATGGAGTGCAGAAGGAAGGTTTTGAAGTAAAAGAAGAGAAGGTGGAACAGGTGACTGTGGCTTTGCGCATTGGATTGCCTAACACAGGAGGTCCTGATGATGATAACAAGGTTTTTTATGTTAAGGAAGAAAAACCCTTGAAGGAAACCTTCCATGACTGTTCTTCTTTTAACCAGGAGAGAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGCAACAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTATTGTTGTGCCCAAGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACACTCCAAACTCATTACAAAAGAAAGCATGGGGTAAAACCATTTAAGTGCAGAAAATGTGGGAAAACATTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAGGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCTCTTAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCATATCCTTCTCTTGAAGGTTTTGAGGATGACAGAGAATGTGTTACCGGATCTGATGAAGATGAAGTTGCTCATGCATGA 921 0.4235 MGLRECNVEDKNLCLQNPNFIEWLKPSSSVSSSPTSSMTRHGLSRETIQFLPMLSEFNHGKPLEEDHGVQKEGFEVKEEKVEQVTVALRIGLPNTGGPDDDNKVFYVKEEKPLKETFHDCSSFNQERRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGVKPFKCRKCGKTFAVKGDWRTHEKNCGRLWYCTCGSDFKHKRSLKDHIRSFGKGHSPYPSLEGFEDDRECVTGSDEDEVAHA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00552 306 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Rops7g00552 306 Pfam C2H2-type zinc finger 144 163 - -
Rops7g00552 306 FunFam Zinc finger protein WIP2 197 279 - -
Rops7g00552 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Rops7g00552 306 Gene3D Classic Zinc Finger 143 166 - -
Rops7g00552 306 SUPERFAMILY beta-beta-alpha zinc fingers 135 167 IPR036236 -
Rops7g00552 306 Gene3D Classic Zinc Finger 224 284 - -
Rops7g00552 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 248 IPR013087 -
Rops7g00552 306 SMART c2h2final6 228 248 IPR013087 -
Rops7g00552 306 SMART c2h2final6 191 223 IPR013087 -
Rops7g00552 306 SMART c2h2final6 144 166 IPR013087 -
Rops7g00552 306 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
Rops7g00552 306 PANTHER ZINC FINGER PROTEIN WIP2 25 296 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00552 Rops-Chr7 7047383 7050560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00552 7 296 C2H2 Transcription Factor Family AT1G08290 56.560 2.37e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00552 zf-C2H2_6 9.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00552 - - gmx:100819306 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00552 7 7047383 7050560 Rops7g00552 7 7047383 7050560 ECH
Rops7g00552 7 7047383 7050560 Rops3g01107 3 15161435 15165130 PCT