Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00542 ATGGCGAGCCACAGCATAGGAGAACTTGGTTTGTCTGAGTCAGGGCCTTCAAGTCATCATGTCCCTTATGGAGTTCTCCATAGGATTAATACTCCTGCATCAACCTTAATCAATCAAGGATCCAGTTTTGATTTTGGAGAGCTGGAAGAAGCAATTACTCTGCAAGGAGTTAAGAGTAGAAATGATGAAGCCAAAGCATCTTTATTCACAGGCAGACCTGCTGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAATCCCAAGAGGAGGTTCCAAATCAGGAGGGGAAAGCACTGATTCAGCTCTTTCAAGCAAAACGGAGCCACCCTTTGAACCAGAATCTCCAATAAGTAAAAAGGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAACAGCATCTGCAGCTTCAACAGAAGATGGCTAGTGATGCCACAAGAACAGGCTCTTCACAGAATCAATCACCAGCCAAATCACCTCAGGAAAAGAGAAAGGGAGCTGGTTCCACATCAGATAAACCACTTGATGCAAAGACATTGAGACGTTTAGCTCAAAACAGGGAGGCTGCAAAGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAAACAAGTAGATTAAAGCTTACCCAACTCGAACAAGACCTTCAAAGAGCACGCTCTCAGGGGTTGTTCATGGATTGGGGTGGTGCTGGAGGCAATGTAAGCTCTGGAGCTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACAACCGGCTCATGGCGGAGCTCCGGAACGGATTGCAGGCTCCCTTATCAGACAGTGATCTGAGAGTGATGGTGGATGGATATTTGTCTCATTATGATGAAGTTTTCAGGCTTAAGGGAGTGGTTGCTAAATCAGATGTGTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTTTGGATTGGTGGTTTTAGGCCCTCTGAGCTTATCACGATGTTGATCCAACAATTAGAGCCACTAGCGGAGCAACAGATAATGGGAATGTATGGCCTAAGGCATTCCTCACAGCAAGCAGAAGAAGCTCTCTCTCAAGGCCTTGAGCAGCTTCAGCAGTCTCTTGTGGACACCATAGCTGGTGGAGGACCTGTTGTTGATGGTGTGCAACAAATGGTTGTGGCCATGGGCAAACTTGCCAATCTTGAAGGATTTGTTCGCCAGGCTGATAATTTGAGACAACAGACCCTTCACCAACTATGTCGATTACTCACAGTTCGTCAAGCAGCACGGTGTTTTCTCGTTATTGGAGAGTACTATGGACGTCTTCGAGCCCTTAGTTCATTTTGGGCATCAAGACCACGAGAGAACTTGATCAGTGATGATAACTCGTGCCAAACAACCACGGACATGCAAATGGTCCAACCTTCTCAGAATAATTTCTCAAATTTCTGA 1455 0.457 MASHSIGELGLSESGPSSHHVPYGVLHRINTPASTLINQGSSFDFGELEEAITLQGVKSRNDEAKASLFTGRPAATLEMFPSWPMRFQQIPRGGSKSGGESTDSALSSKTEPPFEPESPISKKASSSDHHQAFDQQHLQLQQKMASDATRTGSSQNQSPAKSPQEKRKGAGSTSDKPLDAKTLRRLAQNREAAKKSRLRKKAYVQQLETSRLKLTQLEQDLQRARSQGLFMDWGGAGGNVSSGAAMFDMEYARWLEDDNRLMAELRNGLQAPLSDSDLRVMVDGYLSHYDEVFRLKGVVAKSDVFHLINGMWTSQAERCFLWIGGFRPSELITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGGPVVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSFWASRPRENLISDDNSCQTTTDMQMVQPSQNNFSNF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00542 484 MobiDBLite consensus disorder prediction 94 111 - -
Rops7g00542 484 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Rops7g00542 484 MobiDBLite consensus disorder prediction 80 182 - -
Rops7g00542 484 Pfam Seed dormancy control 262 336 IPR025422 GO:0006351|GO:0043565
Rops7g00542 484 SMART brlzneu 177 253 IPR004827 GO:0003700|GO:0006355
Rops7g00542 484 MobiDBLite consensus disorder prediction 131 163 - -
Rops7g00542 484 PANTHER TRANSCRIPTION FACTOR TGA9 127 456 - -
Rops7g00542 484 MobiDBLite consensus disorder prediction 168 182 - -
Rops7g00542 484 ProSiteProfiles DOG1 domain profile. 244 453 IPR025422 GO:0006351|GO:0043565
Rops7g00542 484 FunFam BZIP family transcription factor 180 229 - -
Rops7g00542 484 Gene3D - 180 229 - -
Rops7g00542 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Rops7g00542 484 Coils Coil 200 227 - -
Rops7g00542 484 Pfam bZIP transcription factor 180 222 IPR004827 GO:0003700|GO:0006355
Rops7g00542 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00542 Rops-Chr7 6947703 6954624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00542 126 484 bZIP Transcription Factor Family AT1G08320 68.595 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops7g00542 DOG1 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00542 K14431 - gmx:100775461 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00542 7 6947703 6954624 Rops7g00542 7 6947703 6954624 ECH
Rops7g00542 7 6947703 6954624 Rops3g01110 3 15222007 15229950 PCT