Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00541 ATGTCTGTGGATAAAGATTGTATAAGAACAAAAATTTATTTCAGAAGTTGCATTGCAAAGGAGCTCAAATGGGCAGCACTATCTGAGAATGGAAAATGGAAGCAGAAAAAGGGGTCCACAAGTGAACAAAAGGAATTGAAGTCATCAGGAAGGATGTACCATCATCACCAACATCAAGGAAAAAACATCCATTCTTCTTCAAGAATGCCAATTCCTTCCGAGAGGCATATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCTGGACTTGTGCTCTCAACAGATGCTAAGCCTAGATTAAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAAGGCAACACCAAAAACGGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATGTGCATGGACAAAGCAACAATGTGACACACAAAATCAGTGCAGGAACTGTAGAGAGATTTTCTGAAACTAATGGAACTCACATGAATAAATTAAGCCTTGGACCGCAGACTAACAAGGATTTACATGTAAGTGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAGAGACACTTGCAGCTTAGGATAGAGGCTCAAGGAAAATACCTGCAATCAGTGTTGGAGAAAGCTCAAGAGACACTTGGTAGGCAGAATCTGGGAATAGTAGGACTTGAAGCTGCTAAAGTTCAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGCCTGAATTCAGCATTTTCAGAGATGAAAGAATTACCAGGATTTTGCCCTCAGCAAACACAACCCAACCAGCCAAACGACTGCTCAATGGACAGTTGCCTCACATCTTGTGATAGATCACAGAAGGAGCAAGAGATCCAAAATGCGAGTATTGGCTTAAGACACTTCAATGGCCATGTGTTCATGGAAAGAAAAGAAGCCACAGAAGCTCCCAACCTTAGAAACCCTGAACTCAAGTGGTGTGAGGAAGTGAAAAAGAACACCTTTCTTACCCCATTGAGCAAGAATGAAGAAAGAAGTTATGCTGTAGAAAGCTCTCCCAGCAACTTATCCATGTCCATTGGACTTCAAAGAGAAACTGAGAATGGCATCATCAGCATGTATCCTGAGAGAGTAATCACAGAAAATCATTCAGATGGTGAATTCCAGCGCAGGAACAACACTAGGATAGAAACAATGAAACAAGTGGATGATAGGTTGCCTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACACCCGTGGAGATAATGAAGGTGCAACCAGTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAACTGA 1395 0.4201 MSVDKDCIRTKIYFRSCIAKELKWAALSENGKWKQKKGSTSEQKELKSSGRMYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNVHGQSNNVTHKISAGTVERFSETNGTHMNKLSLGPQTNKDLHVSEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFSEMKELPGFCPQQTQPNQPNDCSMDSCLTSCDRSQKEQEIQNASIGLRHFNGHVFMERKEATEAPNLRNPELKWCEEVKKNTFLTPLSKNEERSYAVESSPSNLSMSIGLQRETENGIISMYPERVITENHSDGEFQRRNNTRIETMKQVDDRLPSYFAAARLDLNTRGDNEGATSCKQLDLNRFSWN* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00541 464 MobiDBLite consensus disorder prediction 31 68 - -
Rops7g00541 464 Gene3D - 96 154 - -
Rops7g00541 464 Coils Coil 198 218 - -
Rops7g00541 464 FunFam Myb family transcription factor 96 154 - -
Rops7g00541 464 SUPERFAMILY Homeodomain-like 96 152 IPR009057 -
Rops7g00541 464 Pfam MYB-CC type transfactor, LHEQLE motif 196 242 IPR025756 -
Rops7g00541 464 Pfam Myb-like DNA-binding domain 99 150 IPR001005 -
Rops7g00541 464 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 152 IPR006447 GO:0003677
Rops7g00541 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 154 IPR017930 -
Rops7g00541 464 MobiDBLite consensus disorder prediction 35 52 - -
Rops7g00541 464 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 59 331 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00541 Rops-Chr7 6909919 6913058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00541 129 464 G2-like Transcription Factor Family AT3G04030 52.353 1.13e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops7g00541 Myb_DNA-binding 4.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00541 - - gmx:100810396 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00541 7 6909919 6913058 Rops3g01114 3 15260970 15264469 PCT