Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00527 ATGGATGATCCCCCACCTGGTTTTCGTTTCTACCCAACAGAAGAGGAGCTAGTTGGTTTCTATCTACACAACCAGCTAGAAGGGAAAAGACCTGACACAAACAGAGTTATCCCAGTCATTGACATCATGGGCATAGAGCCCTGGAACCTTCCAACACTTGCAGGGGAGCTATGCCGTGGAGACACGGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAAGCCAGAGGAGGTAGACCCAACAGAACCACAGATTGTGGGTATTGGAAGGCCACAGGTTCTCCCGGGCACGTTTACTCTTCTGACAATAGAGTCATTGGGATAAAGAAAAACATGGTGTTTTACAAAGGAAAAGCTCCCTCTGGAAAGAAAACCAAATGGAAGATGCATGAATACAGAGCCATTGAACACTCTCGCCAATCCAACACAGCCCCTCCTACGTTGAGGCACGAATTCAGTTTGTGTCGTGTTTATGTCATATCGGGAAGCTTTAGTTCATTTGATCGACGTCCACTAGAGAGGCCAAGAGTGGAGTTGAGAATTGATGGGGATAGAGCTGCTGCTTCAACAAGTAATGCTCAGCAGGTAGCAATGGAGGTGAATGGATCAAGCTCGTCTGAAACTTCTCACTCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGACCTCAGTGTTGCTCATCTCTTACAAGGTGGAGGGTCAAGTGGTACAAATGAGAATATTGCAAATAATGAGGTTGAAGAACCTCTTTGGGATTGGGAACAGCTTAATTGGCTCTAA 786 0.4695 MDDPPPGFRFYPTEEELVGFYLHNQLEGKRPDTNRVIPVIDIMGIEPWNLPTLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTDCGYWKATGSPGHVYSSDNRVIGIKKNMVFYKGKAPSGKKTKWKMHEYRAIEHSRQSNTAPPTLRHEFSLCRVYVISGSFSSFDRRPLERPRVELRIDGDRAAASTSNAQQVAMEVNGSSSSETSHSGGGGGGGGGGGDLSVAHLLQGGGSSGTNENIANNEVEEPLWDWEQLNWL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00527 261 MobiDBLite consensus disorder prediction 188 213 - -
Rops7g00527 261 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Rops7g00527 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 189 - -
Rops7g00527 261 MobiDBLite consensus disorder prediction 232 246 - -
Rops7g00527 261 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Rops7g00527 261 MobiDBLite consensus disorder prediction 184 249 - -
Rops7g00527 261 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Rops7g00527 261 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00527 Rops-Chr7 6788618 6789724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00527 2 260 NAC Transcription Factor Family AT5G22380 54.231 8.37e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g00527 NAM 7.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00527 - - gmx:100784960 392.504