Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00518 ATGGAAGAGGTTTCGAGGGAAGCCCAGATGTCGATTGCTGCTTCTTCCATGTTTCCTGGGTTCAGGTTCTGTCCCACCGACGAGGAGTTGATTTCTTATTACCTCATGAAGAAGTTGGACGGTCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTTTGCAAATATGAGCCTTGGGATTTACCAGCCAAATCATTCATTCAATCAGAGAATGAGTGGTTCTTCTTCTCTCCCCGTGGAAGAAAGTATCCAAATGGTTCACAAAGTAAAAGAGCAACCGAAAGTGGGTATTGGAAGGCCACCGGCAAAGAGCGCAATGTAAAATCAGGTTCTAACGTTATAGGTACAAAGCGAACTTTGGTATTTCACTTAGGACGTGCACCCAAAGGGGAGAGAACTGAATGGATTATGCACGAGTATTGCATCAATGACAAGTCTCAGGATTCTTTGGTTGTTTGTCGCCTCAAGAAGAACACAGAGTTCCGTATTAACGATGCTTCAAATAGAGCTTCTTCAAGTCAAATGCACCAGCTGCATTCACATGAAAGTGATGGTGCTAATTCAGAAGGTGGAATTGATCAAATGGCTGTCTGTGAACAAGACAAAGAGGTTGGATGTAGCTCCAAGCGGAGCAGTAGCAGCTATGGTTCTCTCTCAATGGACCAAATTGATTCCGCGACTGAATCTAATCAGCGACCAGCTAACGACGACCCAAAGGTGGATGAAGAGGATTTTTATGCTGAGATACTAAAGGATGATATCATCAAACTAGATGAATCATCACTGTCCCAAGAGGCTCACACAAGACCACAGGACCCTGCACAGATTCATCCCTGCCAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAACTCAAGGCATTCTCCTGCAGGAATTAGCGTCTCAAGCAAAATGAACTCATCCAAGAGTAGTAGCTTCTTTACCAGAATGACCAAACGTTTGGTGGTATTTGCTTTCTTTCTTCTCACTTTGGTAGCTATATATTTTTGGTCTTTATTGGGTGGTCTCAAACAAGTGAAACATTATGGGAAATATTCTGGTGTAAATTATGATTAG 1086 0.4309 MEEVSREAQMSIAASSMFPGFRFCPTDEELISYYLMKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSENEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKKNTEFRINDASNRASSSQMHQLHSHESDGANSEGGIDQMAVCEQDKEVGCSSKRSSSSYGSLSMDQIDSATESNQRPANDDPKVDEEDFYAEILKDDIIKLDESSLSQEAHTRPQDPAQIHPCQGTAQRRIRLRVGNSRHSPAGISVSSKMNSSKSSSFFTRMTKRLVVFAFFLLTLVAIYFWSLLGGLKQVKHYGKYSGVNYD* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00518 361 MobiDBLite consensus disorder prediction 166 191 - -
Rops7g00518 361 FunFam NAC domain-containing protein 100-like 26 163 - -
Rops7g00518 361 MobiDBLite consensus disorder prediction 166 182 - -
Rops7g00518 361 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Rops7g00518 361 Gene3D NAC domain 26 165 IPR036093 GO:0003677|GO:0006355
Rops7g00518 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 230 - -
Rops7g00518 361 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Rops7g00518 361 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00518 Rops-Chr7 6703308 6705629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00518 4 276 NAC Transcription Factor Family AT2G27300 54.380 1.59e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g00518 NAM 6.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00518 - - cam:101495489 551.206