Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00514 ATGAATTATTTATTTCAGCGATTAAAGCGGAAGAGTGACACAGCTGATGTTCAAGCTGATTCTGGTGATAGGATGATTCCTGCATCCACTGACGCGGCTAAAAGTCCTTTACAGACACCTATATCAGGAAAGACAAGGATGTCAAGCAAAGCCTCTAGACTTACAAAATGCAACAGACCTGAACACCAAACCTCAGGCTCAAATAGAGGTTCTCCTTCAGGCAATAATCTCACTCCTGCCGGGCAATGTCGTTACGACAGCTCTTTAGGTATGTTGACAAAGAGGTTCATCAATTTGATCAAACAAACAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGAGACATTGGAGGTACAAAAAAGGAGGATGTATGACATAACGAATGTTCTTGAAGGGGTTGGCCTTATAGAAAAAGGGATTAAGAGCACGGTTCAATGGAAGGACCTGGATGTTTCAAGACCAGGGGAGGCTGATGATAGTTTTTCTATTTTACAGGCTGAAGTTGAAAATCTTATGATGGAGGAGCACCGTTTGGATGAACAAATAAGTGAGATGCAAGAAAGACTTAGAGATCTTAGTGAAAATGAAAACAATCAAAAATATCTTTTTGTGACTGAGGAGGATATAAAGATTTTGCCCTGTTTCCAGGATGAAACCCTGATAGCAATTAAAGCTCCACATTACACCACTTTGGAGGTCACTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTATACCTTATTAGTCAATTTGAAGAAAAGTTTGAGGAGAATAATGGTGTTGATGTGGCACCCAATCTTCCATCCAGTCCAGAGTTTAACAAGCATCAACCAGTAGTGGTCTCAGAGGATAGAGGGAAGGACCTAGAAATGCTGGGACAAGATGTTCATAGGTCTAGTTCAGATTTGCCTACTTCACAGGAATTTGCGTGTGGGATCATGAAGATTGTTCCTTCAGAGTTTGATAGTGATTCTGACTACTGGCTTTCATCTGATGCTGATGTTTGCATAACAGACATGTGGAGAACAGAATCCGGAGTTGAATGGAATAATCTGGATACAGTTCAAGAAGATTATTGTATGAGTCATGTGAGCCTATCTCCACCACAAGCTCCCCCTTCGAATGTAAGCGAAGTGCCTTCAGAATCTAACCCTGCTGGAGAGGAAGCAGCTTTTGACAAGCTAATGAGCAATGTCGGAGGAAACTTAATAGCAAATCAGCTTTCCTTGTTGCATTTGCCAAAGCAAAGCAAAGCTTTGGACATCAATTTCAGCGCTAATCAGTGCATAACATTGGGTGAAAGATATCAAAGAAACAGTAATCGAGGTGGCCAGAGAGTTCTCTCCTGTGTCTCATATGGTTTTTACTCAAAAGTTCTCCTCCTTATTAGTGGGGATGAAGCAAAGAAAAGGAGATCCACCGGCAATGACACTCCACACCCAAGTTAG 1497 0.4175 MNYLFQRLKRKSDTADVQADSGDRMIPASTDAAKSPLQTPISGKTRMSSKASRLTKCNRPEHQTSGSNRGSPSGNNLTPAGQCRYDSSLGMLTKRFINLIKQTEDGILDLNKAAETLEVQKRRMYDITNVLEGVGLIEKGIKSTVQWKDLDVSRPGEADDSFSILQAEVENLMMEEHRLDEQISEMQERLRDLSENENNQKYLFVTEEDIKILPCFQDETLIAIKAPHYTTLEVTDPDEAVDYPQRRYRIVLRSTMGPIDVYLISQFEEKFEENNGVDVAPNLPSSPEFNKHQPVVVSEDRGKDLEMLGQDVHRSSSDLPTSQEFACGIMKIVPSEFDSDSDYWLSSDADVCITDMWRTESGVEWNNLDTVQEDYCMSHVSLSPPQAPPSNVSEVPSESNPAGEEAAFDKLMSNVGGNLIANQLSLLHLPKQSKALDINFSANQCITLGERYQRNSNRGGQRVLSCVSYGFYSKVLLLISGDEAKKRRSTGNDTPHPS* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00514 498 Gene3D - 78 151 IPR036388 -
Rops7g00514 498 Pfam E2F/DP family winged-helix DNA-binding domain 86 148 IPR003316 GO:0005667|GO:0006355
Rops7g00514 498 Coils Coil 169 196 - -
Rops7g00514 498 MobiDBLite consensus disorder prediction 32 82 - -
Rops7g00514 498 Pfam E2F transcription factor CC-MB domain 165 265 IPR032198 GO:0046983
Rops7g00514 498 MobiDBLite consensus disorder prediction 382 402 - -
Rops7g00514 498 Coils Coil 100 120 - -
Rops7g00514 498 CDD E2F_DD 160 266 IPR032198 GO:0046983
Rops7g00514 498 SUPERFAMILY "Winged helix" DNA-binding domain 84 147 IPR036390 -
Rops7g00514 498 MobiDBLite consensus disorder prediction 8 82 - -
Rops7g00514 498 SUPERFAMILY E2F-DP heterodimerization region 162 266 IPR037241 -
Rops7g00514 498 SMART E2F_TDP_2 84 149 IPR003316 GO:0005667|GO:0006355
Rops7g00514 498 PANTHER TRANSCRIPTION FACTOR E2F 30 363 IPR015633 GO:0000978|GO:0006357
Rops7g00514 498 FunFam E2F transcription factor 1 78 151 - -
Rops7g00514 498 MobiDBLite consensus disorder prediction 382 398 - -
Rops7g00514 498 Gene3D - 157 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00514 Rops-Chr7 6630860 6636212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00514 37 394 E2F-DP Transcription Factor Family AT5G22220 56.053 1.67e-128 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops7g00514 E2F_CC-MB 8.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00514 K06620 - gmx:100819817 573.163