Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00507 ATGGAGTCTCGAATGGATCAGTATGAGATCATGGAACAGATCGGTCGTGGTGCGTTTGGTGCTGCAATTCTCGTTAACCATAAGGCGGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTGGCACGCCAGACTGAACGTTGCAGAAAATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTCAGCACCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGCTACGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTTGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTACATGTGTCCAGAACTGCTTGCGGATATTCCTTATGGTTTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCGGGATTGATAAGCAAGATAAATCGTTCCTCTATTGGTCCTTTGCCTCCCTGTTATTCCCCATTCTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACGGCATCTGAAATCTTAAAGCACCCTTACTTGCAGCCTTATGTTCATCAATATTGTTCATCTTTCTGTCCTCCAACTGCCTGTTCTCCTGAAAAGCCAATTTCTGCTGTCCATGATCCTCGAAAAAATATGGCAGAAAGTCAAAACAGTAGTAGTTCGAGTAGTGAAAGAGGTAGTCTGATGCCAAATGAGAGAAACATTAGAAAAGCAGAGCCAAAGTGTGATAATAAAATCACTGAGATAGACCTGGCATCAATTGATGATGATGACTCTGAGCATCTCCTGCCCAGTGAAGAAGGAAATAGCTCAAGCAATGTCAATGCCAAAACAGATAAGCAGGAGGTTAGGAAGCAAACTCACAATGAACACCATTCTAATGTTGCATCTAAGCAACCAAAAACAATTAAGAATACGATGATGGTATTAAAAGATGAAAAAGTTAGAGAGGCAAGTTCTCCAATGAGAGGCAATCGCATAAAGGCAGGTGGTGTATCAAAACATAAAAAAAATACAGAGACATTGTCCAAATTGCCCAAACCTAGTTTTGGTGTTTCTGGTTTGAAGCCTAATTCAGAGGTGCCTACTATTGCACCTTCAAGAGCAACCCCTGATTCTGCAAAACGAATGCCGGGATCACATGCTTTGAAGCATCAGTTACCGATGATCGAATCTACACTAAAAACTAAACCTCGACATAATGTGACTCCACCATCTGGTCCTATCAAACAAGTAGAAGCAGGTGGAGTTCCTGTCAAGCCAAAGCAAAAGAATCCTCCAAGCTTACTTAAACCGCCTTCATTTCCAGGACTTGTGAGGCAGGCTGGGCTTGATGTTCGAAATGCAGCAGCTGATACAGGAAAGTTAATTCCAAATAAAATTGCTCAGGAGCCTAGGATGAGCCATCATCAGTTGACCAATGGTCATCTACCACATGTTTCTAGAGAGATTACTAGAGAGCCTTCAAAGGCTTTTGAAAGTAGTTCCAAAGGCATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCGGTCTCTATTCAAGGATTTGAACTTTCTGACTTTGCAACCACTTTTATTGACTTGAGTGAACCAATACTTCCTGTTCACGAGAGTCTAAACCACAATGAAAAGGTGGAATCACATCCAGATAGCCATTCCCCTGCTGGAAAATTGTCTGGGGAAACCTCTCTGTTTACACCAAATTTTAAGGATACAATTATTAGTAATGAGAAGGTAAGTCCCAATTTAACCCTCGATCACTCTGTTCAAGATTCCAAGGTAATGTTTGCTTCTGATGATAGTTTTCTAAAAAATCAGACAACTACATCTACTGCCTCCGGGTATGATAATAGATCTCTAGATCCCTCTGCTGAAGTCACACAAGAAATCAAGGACCTTCAAGATATTTCTATGGAAATGACTTCAACACCGTCTCTCAAATATCCTCTCCCCATTTCTGGTGAAAAGTCTGATTGTGATGCTAGTCCAGCAAGCCAGCTAAATAATAGGCCTGATAAAGTTAGCCAGTCAAAACTATCGTGCATCTCCATCAATGATGACAAATTCATGGTAAGGGAAAGACTGTCACCAGTTGCTGAAACTGCTCCGATTATCTCTACTAAAATTTCAAGCCAGAAAGTTTTAAAAGAGAAAGGAACAGCTCTACAGAATCCAGCACCAGAAAGGCCAGCTCCTGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTAATACGCCATAGCACTTACCGTCTGGCGAGTGAGCTGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAATTTATCAGCATTGCCAGGGATGATTTAGAAATGAAAAACACGAGCACTCCCTTGACCCTTAAATCTTCAAATTGCTCTGAAGCTACTAGATTGAAGTCAAACATTTCTGATAATTTGGAAATTAGAAACTTGAGCACTCCTCCTAAATTTAAATCTGCAAGTTGCTCTGACTCTTTGAGCTCAAAATTAAGTATCTCAGACCATCCTGATGTTAAGGAACAAGATGTGAAAAAACCTGATTCTCTCGTTTCAAAATCTGATTCCACTGACTATACCACACATAACCCTCCTACAGCCAAAGAGGAAACACCAGCAAAGGAAACATTGGATGTTAAATCTTCCAGCCAAAGAGCTGAGGCACTTGAAGGGCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTTTGAAGCCATTTGGAAAAGATAAGGTTTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAAAGTCTAAAAGGATTGATGATTGAGGAAAGTGGGGGACGCTGTTAA 3105 0.4135 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRKSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPFLKTLIKGMLRKNPEHRPTASEILKHPYLQPYVHQYCSSFCPPTACSPEKPISAVHDPRKNMAESQNSSSSSSERGSLMPNERNIRKAEPKCDNKITEIDLASIDDDDSEHLLPSEEGNSSSNVNAKTDKQEVRKQTHNEHHSNVASKQPKTIKNTMMVLKDEKVREASSPMRGNRIKAGGVSKHKKNTETLSKLPKPSFGVSGLKPNSEVPTIAPSRATPDSAKRMPGSHALKHQLPMIESTLKTKPRHNVTPPSGPIKQVEAGGVPVKPKQKNPPSLLKPPSFPGLVRQAGLDVRNAAADTGKLIPNKIAQEPRMSHHQLTNGHLPHVSREITREPSKAFESSSKGMQTDSSNSVSSSVSIQGFELSDFATTFIDLSEPILPVHESLNHNEKVESHPDSHSPAGKLSGETSLFTPNFKDTIISNEKVSPNLTLDHSVQDSKVMFASDDSFLKNQTTTSTASGYDNRSLDPSAEVTQEIKDLQDISMEMTSTPSLKYPLPISGEKSDCDASPASQLNNRPDKVSQSKLSCISINDDKFMVRERLSPVAETAPIISTKISSQKVLKEKGTALQNPAPERPAPGHLPPAFDDVIHVIRHSTYRLASELPVKESVEMGVQNVDVGKFISIARDDLEMKNTSTPLTLKSSNCSEATRLKSNISDNLEIRNLSTPPKFKSASCSDSLSSKLSISDHPDVKEQDVKKPDSLVSKSDSTDYTTHNPPTAKEETPAKETLDVKSSSQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRC* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00507 1034 SUPERFAMILY Protein kinase-like (PK-like) 4 308 IPR011009 -
Rops7g00507 1034 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Rops7g00507 1034 MobiDBLite consensus disorder prediction 574 589 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 480 516 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 942 956 - -
Rops7g00507 1034 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00507 1034 MobiDBLite consensus disorder prediction 731 755 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 313 342 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 293 312 - -
Rops7g00507 1034 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00507 1034 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Rops7g00507 1034 CDD STKc_Nek 7 262 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 399 464 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 361 380 - -
Rops7g00507 1034 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Rops7g00507 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Rops7g00507 1034 MobiDBLite consensus disorder prediction 918 968 - -
Rops7g00507 1034 Gene3D Transferase(Phosphotransferase) domain 1 90 337 - -
Rops7g00507 1034 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 285 382 - -
Rops7g00507 1034 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00507 1034 MobiDBLite consensus disorder prediction 570 589 - -
Rops7g00507 1034 MobiDBLite consensus disorder prediction 923 941 - -
Rops7g00507 1034 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00507 Rops-Chr7 6548369 6555729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00507 14 263 MAP Kinase Kinase Kinase AT1G53570 32.157 2.96e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops7g00507 Pkinase 3.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00507 K08857 - gmx:100818943 1557.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00507 7 6548369 6555729 Rops7g00507 7 6548369 6555729 ECH
Rops7g00507 7 6548369 6555729 Rops3g01172 3 16489782 16496886 PCT