Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00485 ATGGCAACGTACTTTGATGGCAGCAGCAGCACTTCAGCAATTCAATCTTCTTCTGCTGATGGGTTACAAACACTTCACCTCATGAACCCAACCTATCAACCCTACCCTGACGCAACGCACCACCCTACACCCAATATGTTCCTCTTCAATCATCCCCAAGCGCTCAACCTCTCCCACGCGCCGCCACTTCCAACTTCCCCCAACCAACAACACACCATGATTCATGGAGTCACAAACATCCTTGGATCCACCGACTCCGACCAAAACACACGACCCTCCTTGTTCGGACACCACGACATCACCGCCTTCCACGGCTTCTCCTCCGCCGCTGCAGCTGCCCCTCGCGTGTTGTGGGGCCCGGTGATTGATCAACCCTCGTCACCAGCTGCAACCCAGTCTAACAGCACCGCCGGTGGTGGTTTCCGGTGGCCTAGTCAGCAGGGGTTGTCACTCAGCCTTTCCTCGGAACAAACAGTTCATAGGTCGTTTTCCGGCGAGATCGACGTTCCGACCGGACATGCTCAGGTTGCCGGAATCGGTAATTCTCCGTCATCGGCGTCGAACGGAGTTTCCAGTGTTATTTTGGGGTCAAAGTATTTGAAAGCCGCTCAGGAGCTTCTGGATGAGGTTGTTAACGTGGGTAAAGGAATCTACAAAGAAGAAAAATTCGCAAATAAAGAGAAGATGAAAGCGAATAGGGAATCTACTTCAAATGGTGGTGGGGGAGAAAACAGTGCAGGTAAACAAGTAGTTGAACTCAGTACAGCCCAAAGACAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCACTATGCTTGAAGAGGTAGAGCAAAGGTACTGGCAATATCACAACCAAATGCAAATTGTAATATCATCATTTGAACAAGCAGCCGGTTTTGGGGCAGCAAAATCTTACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGATGTCTTAAAGATGCAATCACTGCACAAATAAGAGCTACGAGCAAGACCTTGGGTGAAGATGATTGCTTAGGAGTTAAAGTAGAAGGGTCAAGGCTAAGGTATGTTGACCATCATCTAAGGCAACAACGGGCACTGCAACAGCTGGGAATGATTCAGCCCAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGAGCTGTCTCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCCTACCCAAAGGACTCAGACAAAGTTATGCTTGCTAAACAAACTGGACTTGCTAGGAGCCAGGTATCAAACTGGTTTATTAATGCCCGAGTTAGGCTATGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAAGCAAGGAGCAGGAACATGCTAATGGATCAAAAGAATCGAGCAAGGAGTTTGGGGCAACAACAAATGTCACACCTGAATCAGACATGCAAAGGAGTCCAAACAAGCCAAGAAGTTCAGAAATGCTGAACTCTCCTAGTAGTATCCTTTCAGTGGACATGGAAATGAAGCATGGAGGAGATACTAATAGAGAAGCCAACACAAAATTTGGCATTGATAGGAACCACAAAGATGGCTACCCTTTAATGAATGAAAATGCAAACCATGGTGGTGGGGGTTTCGGAGCTTTCTCCATGGAAGATATTGGAAGCAGGTTTAATGTCACTGAGCAATTGGCTTCTAGGTTCCATGGAAATGGTGTTTCTCTTACTCTTGGACTTCCCCACAATGAGAACCTCCCTATCTCAGGAACTCAACATGGATTTCTCTCACAAAACATACATTTGGGAAGGAGACTTGAAATGGGAACCAATGGAAATGAGTTTGGTGCTATCAACACTCCACCTTCTTCTCACTCGGGCACAAGTTATGAGAGTATTGACATTCAAAACAGAAAGAGGTTTGCTTCCCAATTATTGCCAGATTTCGTGACCTAA 1923 0.4675 MATYFDGSSSTSAIQSSSADGLQTLHLMNPTYQPYPDATHHPTPNMFLFNHPQALNLSHAPPLPTSPNQQHTMIHGVTNILGSTDSDQNTRPSLFGHHDITAFHGFSSAAAAAPRVLWGPVIDQPSSPAATQSNSTAGGGFRWPSQQGLSLSLSSEQTVHRSFSGEIDVPTGHAQVAGIGNSPSSASNGVSSVILGSKYLKAAQELLDEVVNVGKGIYKEEKFANKEKMKANRESTSNGGGGENSAGKQVVELSTAQRQELQMKKSKLVTMLEEVEQRYWQYHNQMQIVISSFEQAAGFGAAKSYTALALKTISKQFRCLKDAITAQIRATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEESKEQEHANGSKESSKEFGATTNVTPESDMQRSPNKPRSSEMLNSPSSILSVDMEMKHGGDTNREANTKFGIDRNHKDGYPLMNENANHGGGGFGAFSMEDIGSRFNVTEQLASRFHGNGVSLTLGLPHNENLPISGTQHGFLSQNIHLGRRLEMGTNGNEFGAINTPPSSHSGTSYESIDIQNRKRFASQLLPDFVT* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00485 640 Coils Coil 258 278 - -
Rops7g00485 640 CDD homeodomain 374 435 IPR001356 GO:0003677
Rops7g00485 640 MobiDBLite consensus disorder prediction 125 153 - -
Rops7g00485 640 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677
Rops7g00485 640 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
Rops7g00485 640 Gene3D - 377 457 - -
Rops7g00485 640 MobiDBLite consensus disorder prediction 456 487 - -
Rops7g00485 640 SMART prehox3 188 326 IPR006563 -
Rops7g00485 640 MobiDBLite consensus disorder prediction 227 247 - -
Rops7g00485 640 Pfam Associated with HOX 193 325 IPR006563 -
Rops7g00485 640 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 456 - -
Rops7g00485 640 SMART HOX_1 374 438 IPR001356 GO:0003677
Rops7g00485 640 SUPERFAMILY Homeodomain-like 375 440 IPR009057 -
Rops7g00485 640 MobiDBLite consensus disorder prediction 443 487 - -
Rops7g00485 640 MobiDBLite consensus disorder prediction 124 153 - -
Rops7g00485 640 FunFam BEL1-like homeodomain protein 9 377 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00485 Rops-Chr7 6091158 6095989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00485 1 639 Homeobox Transcription Factor Family AT2G35940 42.355 5.22e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops7g00485 POX 3.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00485 - - gmx:100779075 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00485 7 6091158 6095989 Rops7g00485 7 6091158 6095989 ECH
Rops7g00485 7 6091158 6095989 Rops3g01179 3 16694399 16699825 PCT