Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00482 ATGGCTGAAATTGAAATTCCTCAATTTTTCGTTTGTCCCATTTCTCTTCAGATCATTAAGGACCCTGTGACAACTATTACAGGCATAACATATGACAGAGAAAGCATCGAGCATTGGTTGTTGATGGCAAAAAATTGTGCTTGTCCTGTTACCAAACAACCATTGCCAAGAAACTCAGAGTTCTTGACACCAAACCACACACTTGGGAGGCTAATCCAAGCATGGTGCTCAGCAAATGAAGCCAATGGTGTTGACCAAATTCCAACCCCGAAAGCTCCTCTAAACAAGGCCCACGTTGAGAAACTTGTTAAAGATCTTGAGGTTCCTCGCTACTTTCAAATAACATTGGAAAAATTGCATGCTCTTGCTACAGAGAGTGAGAGGAATAGAAGGTGCATGGCTGAAGCTGGAGTAGCCAAGGCTATGGTTAAGATAATCATAAAAAGTTTCAAGCAAGGTAAGACCACGTGCCTTGAAGAATCTCTGAAAATTCTTCGTTTACTCTTGAGTTCGGCCATGGCTGAAAACAATATGAAGCTCATAGTTGGTGAAAACTTTGACTTTCTCAACTCATTGACTTGGATTTTGCAACTTCACAAGGGTAAAGACATCAAGATGATAAACGAAGCAATGCCTATATTGAAATTGGCAATTGAAGTCGAAGATTCAACCTCTTTGGGCAATTTAAAGCTTGAATTCTTCAGAGAAATCGTAAGTGTATTAAGAAATAGAGCACTTTCTCAACAAGCTATCAAATCTGCATTGCATGTCCTTATAGAAACATTCCCTTCGGGTAGAAATAGGATGAAGATTGTGGAAGCAGGTGCAGTAATGGAACTCATTGAGCTTGCACTTGAAAAACCAGAAAAGAACCAAACAGAGCTTATATTCATTCTTATGGCGAATCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAGCATGCAGCAGGTATTGCAATGCTTTCTAAAAGAACCCTCAGGGTTTCTCCAACAACAGATGATCTAGCTCTTCATATATTTTCACTGATTTCCAAGAATTCAGCATCTAATAAGGTTGTTCAAGAAATGTTGAAGGTTGGTGCTGTGTCCAAGCTTTGCATGGTGATGCAAGCTGATTGTGCTTCCAATTTGAAAGTAAAAGCAAGAGGGATTCTTAGGTTGCATTCCAAAGCATGGAACGATTCTCCTTGCATTCAAGTATATTTGTTAACCAGAGACCAAAGGTGA 1233 0.3982 MAEIEIPQFFVCPISLQIIKDPVTTITGITYDRESIEHWLLMAKNCACPVTKQPLPRNSEFLTPNHTLGRLIQAWCSANEANGVDQIPTPKAPLNKAHVEKLVKDLEVPRYFQITLEKLHALATESERNRRCMAEAGVAKAMVKIIIKSFKQGKTTCLEESLKILRLLLSSAMAENNMKLIVGENFDFLNSLTWILQLHKGKDIKMINEAMPILKLAIEVEDSTSLGNLKLEFFREIVSVLRNRALSQQAIKSALHVLIETFPSGRNRMKIVEAGAVMELIELALEKPEKNQTELIFILMANLCSCADGREQFLQHAAGIAMLSKRTLRVSPTTDDLALHIFSLISKNSASNKVVQEMLKVGAVSKLCMVMQADCASNLKVKARGILRLHSKAWNDSPCIQVYLLTRDQR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00482 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Rops7g00482 410 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Rops7g00482 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Rops7g00482 410 SUPERFAMILY ARM repeat 111 383 IPR016024 -
Rops7g00482 410 CDD RING-Ubox_PUB 7 55 IPR045210 -
Rops7g00482 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Rops7g00482 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Rops7g00482 410 Gene3D - 108 396 IPR011989 -
Rops7g00482 410 SUPERFAMILY RING/U-box 4 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00482 Rops-Chr7 6053282 6054702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00482 3 400 U-box Gene Family AT2G35930 41.045 7.54e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00482 - - gmx:100787419 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00482 7 6053282 6054702 Rops3g01181 3 16715992 16717176 PCT