Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00481 ATGAGAGACCCTGTCACGGTTTGCACAGGAATCACTTATGATAGAGAAAACATAGAGAGATGGTTGTTTTCATGCAAGAACAAAACCTGCCCTGTTACTAAACAGTCCCTTTTAGACACTGATCTTACACCAAACCACACTCTACGCCGTTTGATCCAAGCTTGGTGCACCCTAAATGCCTCACATGGAGTTGAACGTATTCCAACTCCAAAGCCACCCATTGATAGAACTCAGATTGTCAAACTCATCTCTGAAGCAAAGAAGTTCCCAGATAAGCAACTCAAGTGCCTTAGAAGGCTTCGATCTATTGCTTTTGAGGGTGAAAGAAACAAGAAATGTTTGGAGTCTGCAGGAGCAATAGATTTCTTGGCTTCAACCATGAAGAACATACAACAAGATTCAACTGTTCTGAGTGAAGCAGCTATTGAAGTTTTATTTCATCTAAATCCTTCTGAATCTCAGCTTAAAAATCTGATAAACAACGAGGGTGTTCAATTTCTTGAGTCTTTGTTTCAAGTGTTGAGGCTTGGAAACTACCAATCTCGAGCTTATGCAACCACGTTGTTAAAGTCAACATTTGAGGTAGCTGATCCAATCCAATTGGTAAGTGTCAAAACAGTTCTGTTTGAGGAAATAATGAGAGTGCTACGTGATCAGATTTCACATCAAGCTTCAAAGGCTGCATTGAAGCTTATTGTGGAGCTTTCTCCATGGGGAAGAAACCGAATCAAAGCAGTTGAGGGTGGTGTAGTTTCAGTCCTCGTTGAGCTTCTTCTTGATGCCACAGAAAGAAGAGCATGTGAACTCATACTAATAGCTTTAGATCAACTTTGTGGTTGTGCAGAAGGGAGGGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCAAAGAAAATTCTAAGGATTTCTCATGTTGCAAGTGATAGAGGGGTTAGAATTTTGACCTCAATTTGTAGGTATTCTGCAAATTCTAGAGTCCTTCATGAAATGTTGCAAGTTGGGGCAGTGTCCAAGTTATGTTTGGTGCTTCAAGTGGATAGCAGTTTCAAGACAAAAGAGAGAGCCAAGGAGATACTCAAATTGCACTCCACAGTTTGGAAGAATTCCTCATGTATTCCTGTACCTTTGTTATCATCCTATCCATGA 1152 0.4097 MRDPVTVCTGITYDRENIERWLFSCKNKTCPVTKQSLLDTDLTPNHTLRRLIQAWCTLNASHGVERIPTPKPPIDRTQIVKLISEAKKFPDKQLKCLRRLRSIAFEGERNKKCLESAGAIDFLASTMKNIQQDSTVLSEAAIEVLFHLNPSESQLKNLINNEGVQFLESLFQVLRLGNYQSRAYATTLLKSTFEVADPIQLVSVKTVLFEEIMRVLRDQISHQASKAALKLIVELSPWGRNRIKAVEGGVVSVLVELLLDATERRACELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRISHVASDRGVRILTSICRYSANSRVLHEMLQVGAVSKLCLVLQVDSSFKTKERAKEILKLHSTVWKNSSCIPVPLLSSYP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00481 383 ProSiteProfiles U-box domain profile. 1 62 IPR003613 GO:0004842|GO:0016567
Rops7g00481 383 Gene3D - 77 373 IPR011989 -
Rops7g00481 383 PANTHER WDSAM1 PROTEIN 1 375 IPR045185 GO:0061630
Rops7g00481 383 SUPERFAMILY ARM repeat 89 361 IPR016024 -
Rops7g00481 383 Pfam U-box domain 1 57 IPR003613 GO:0004842|GO:0016567
Rops7g00481 383 CDD RING-Ubox_PUB 1 42 IPR045210 -
Rops7g00481 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Rops7g00481 383 SMART Ubox_2 1 55 IPR003613 GO:0004842|GO:0016567
Rops7g00481 383 SUPERFAMILY RING/U-box 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00481 Rops-Chr7 6045602 6046753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00481 1 383 U-box Gene Family AT2G35930 54.264 1.97e-153 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00481 - - gmx:100786877 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00481 7 6045602 6046753 Rops7g00481 7 6045602 6046753 ECH
Rops7g00481 7 6045602 6046753 Rops3g01182 3 16730807 16731964 PCT