Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00462 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTGACAGTTAGATGTGGGCATTGTGCTAATCTGTTATCAGTTAACATGGGAGCATCACTTCAAACATTTCCCCCTCATGATCTTCAGAAACAGCACCTCATAAGTGTTCAAGAACCAAGCAGCAAGGAACTAGGATCATCTTCAAAATGCAAAGGGTTTGAGACTGTAGACCATGAGCAACCTAGGATTCCTCCTATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTACAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTATCAATCCAGATATCAGCCACAGGGAAGCATTCAGCACAGCAGCCAAAAACTGGGCACATTTTCCTCATATTCACTTTGGGTCAAAGCTGGATGGTAACAAGCAAGCAAAGTTGGACCAGGGGGATGGTGCTCAAAAGTCTAACGGATTCTACTGA 537 0.4413 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTFPPHDLQKQHLISVQEPSSKELGSSSKCKGFETVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAINPDISHREAFSTAAKNWAHFPHIHFGSKLDGNKQAKLDQGDGAQKSNGFY* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00462 178 CDD HMG-box_SF 109 145 - -
Rops7g00462 178 Gene3D High mobility group box domain 100 167 IPR036910 -
Rops7g00462 178 PANTHER PROTEIN YABBY 6-RELATED 1 164 IPR006780 GO:0007275
Rops7g00462 178 FunFam axial regulator YABBY 5-like 93 151 - -
Rops7g00462 178 MobiDBLite consensus disorder prediction 156 178 - -
Rops7g00462 178 SUPERFAMILY HMG-box 100 148 IPR036910 -
Rops7g00462 178 MobiDBLite consensus disorder prediction 77 110 - -
Rops7g00462 178 MobiDBLite consensus disorder prediction 87 104 - -
Rops7g00462 178 Pfam YABBY protein 7 154 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00462 Rops-Chr7 5791668 5799566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00462 1 178 C2C2-YABBY Transcription Factor Family AT1G08465 67.914 9.82e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops7g00462 YABBY 3e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00462 K25796 - gmx:100785458 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00462 7 5791668 5799566 Rops3g01197 3 16915136 16921402 PCT