Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00459 ATGGAGGCTCCTGTGATGGAAGAGAATGATAATACCAATAGTGAGGCGCATTTGACTTCTGCTGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCCTCCACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAATGTATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAAACTATCAGTCTCAAAGATCCAACAAGCCAGGAATTGTTTGAGGGAGTGGAAAGAGAGAGGAACATTAGGTTCAATCCATCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTACCAGTAGGAGCAAATGATGCTGACCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCCGCAGCAATGGGGCGAGCACGTCACATTGCTAGAAGGGAAGGCCAGAGAAACAGGTCAGCAGCTCAAGGTCGCCCACATTTTGTGGTATTTTCAACGCATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCCTCTCCAACTCAGAGGGGAGATGGTGATCCAGCTCCTGCAATTGCTGTTGCTGCTCTATCTCCAACTCCTGGAGAAGAATCACCACAGCTGTCTTTAGTTCCTCCTGTTCAAGCTGACCAGGTTTCTGCTTCAGGATCTGGGTCTACTACTCTTGCTACTGATCATCAGGGATCATCTTACAACAATAGGAGATCTCCTAATCAGTCTTCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAATTTCAGTCATTTTCAGACTCTCTGAAATCTAAACTAAATGCTGTATCAACAAGATACAAAGAATCGATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAACACCTCTATGTCTGATCTTGGATCTGAAGTCAGGCGAGAAGTTAATGCTGGGATTGCGACTGTATCCCGCATGATGGAACGCCTGGAGACCAGAGACAATAATAGAAGCAATAGCAATTCTGCTCCAAGTAATCTAGAGGATGGTTCAGTTCTAGTTCAAATTAAGCATATAGAAGAGAATTGCTTAAACTCCCAAGATTTGTTTTGTCCAGAAGGTAGAGATAGAATTGCCCATTAG 1161 0.4513 MEAPVMEENDNTNSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQTISLKDPTSQELFEGVERERNIRFNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSAAQGRPHFVVFSTHPNSPPMAPASSSPTQRGDGDPAPAIAVAALSPTPGEESPQLSLVPPVQADQVSASGSGSTTLATDHQGSSYNNRRSPNQSSPSSQDRAGPSEFQSFSDSLKSKLNAVSTRYKESISKSTRGWKERWFSRNTSMSDLGSEVRREVNAGIATVSRMMERLETRDNNRSNSNSAPSNLEDGSVLVQIKHIEENCLNSQDLFCPEGRDRIAH* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00459 386 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 86 - -
Rops7g00459 386 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Rops7g00459 386 MobiDBLite consensus disorder prediction 226 276 - -
Rops7g00459 386 Pfam Ring finger domain 36 77 IPR001841 -
Rops7g00459 386 SUPERFAMILY RING/U-box 30 85 - -
Rops7g00459 386 MobiDBLite consensus disorder prediction 173 203 - -
Rops7g00459 386 MobiDBLite consensus disorder prediction 181 195 - -
Rops7g00459 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 86 IPR013083 -
Rops7g00459 386 SMART ring_2 37 77 IPR001841 -
Rops7g00459 386 FunFam E3 ubiquitin-protein ligase RHF2A 8 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00459 Rops-Chr7 5756798 5760649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00459 34 85 C3H Transcription Factor Family AT5G15790 42.308 4.23e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00459 K19043 - gmx:100780275 609.757