Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00450 ATGGAATCAGATCTTCAGCAACAGACACAGATAAATTCTTCTGGTTTAACACGGTACCGATCAGCACCGAGTTCATATTTTAACAACATCATTGACCGAGAGTTCTATGAGCACATTTTTAATCGACCCTCGAGCCCTGAAACAGAACGAGTTTTCTCAAGGTTTATGAACAGTCTTGGTGGTGGTGAAACAGAAGAAGATTCACTCACTCAGAAACTCTCAGCTGATTCTGCAGTGAAAGAAGAGATTAATCAGCAGGATCAGGGTATGCCCTCCATCAACAATAATGAACATGTGGTTCTTCAGCAGAGTAATAATATGAATAATTATAACTCTGCTCCTCAAAATTTTTATCAAAGCTCTTCGAGACCACCTTTGCCAAATCAGGGTATGGAAGGAACGTATTCACTTGGAGTTAATCGGTTGCAGCAAATGAAGACTGGTGGTGGAAATAACTCTAATCTTATCAGGCATAGTAGTTCACCAGCAGGACTATTTTCCCAAATTAACATTGAGAATGGCTATGTTGGTATGAGAGGCATGGGAACTATAGGAGCTGTTAATAACTCTATTGAAGATGCAAAATTTTCTACTTCAAGGAGGTTGAAGAATTCATCAAACTACTCATCAGGGCGAATGTCATCAATAGCTGAAATTGGTGAAAAGGGTTTCCCAGTTAATCCCTGGGATGATTCTGCAATGATGTCTGAAAATGTTAGTGGTCTGAAAAGATTTAGAGATAATGATGCAAAACCATTTTCTGGTTTAAATGCTGCTGAGACTCAGAATGAAACAGGAGGACAGTCTACTTCTCCTTTGGCTCATCAAATGAGTTTGCCTAATACTTCAGCTGAAATGGCAGCTATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTTCCATGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCTAGAAGTATTGCAGAGAGGGTTAGAAGAACTAAAATCAGTGAACGTATGAGGAAACTTCAAGATCTCGTCCCAAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACTTGGCTGTTGATTACATCAAAGACCTTCAAAAGCAAGTTGAGACACTTTCAGATTGTCACTCAAAGTGTACGTGTCCACACAAGCAGCAATAA 1143 0.4016 MESDLQQQTQINSSGLTRYRSAPSSYFNNIIDREFYEHIFNRPSSPETERVFSRFMNSLGGGETEEDSLTQKLSADSAVKEEINQQDQGMPSINNNEHVVLQQSNNMNNYNSAPQNFYQSSSRPPLPNQGMEGTYSLGVNRLQQMKTGGGNNSNLIRHSSSPAGLFSQINIENGYVGMRGMGTIGAVNNSIEDAKFSTSRRLKNSSNYSSGRMSSIAEIGEKGFPVNPWDDSAMMSENVSGLKRFRDNDAKPFSGLNAAETQNETGGQSTSPLAHQMSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDCHSKCTCPHKQQ* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00450 380 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 373 - -
Rops7g00450 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 359 IPR011598 GO:0046983
Rops7g00450 380 FunFam Transcription factor bHLH130 family 310 379 - -
Rops7g00450 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 373 IPR036638 GO:0046983
Rops7g00450 380 SMART finulus 315 365 IPR011598 GO:0046983
Rops7g00450 380 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
Rops7g00450 380 MobiDBLite consensus disorder prediction 250 274 - -
Rops7g00450 380 Gene3D - 310 379 IPR036638 GO:0046983
Rops7g00450 380 MobiDBLite consensus disorder prediction 255 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00450 Rops-Chr7 5583596 5586781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00450 1 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.206 5.15e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g00450 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00450 - - gmx:100806368 550.436