Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00427 ATGGATTCCGAAGATGATATGCACGACGCCAATGATATCGAGTCTCTTGATGACGATTTCTACAGTGGAGAAACCGAGGATGCTCCCATGGATTACTACAGCGACTACGATGATGACGCCGATGATTACTTTGACGATGCTGATGATTCCGACCGGATTGAGTCTCGTCGACCGGAGCAAAATTATGCCATATTGAAAGAATCGGATATCCGGCAAAGGCAGGAAGATGACATCACTAGAGTAGCAACAGTTCTTTCCATACCACGAGTTTCTGCAAGCATCTTACTTCGTCATTATAATTGGAGTGTCAGTAAAGTGCACGATGCTTGGTTTGCTGATGAAGATCAAGTCCGAAAAACGGTTGGTTTGTTGGAGATGCCAGTTTTCCAGATTCCTAATTCTAGAGAGCTTACTTGCGGCATCTGTTTTGATACTTATCCGCGTGCCAGCATCAAAACTGCTAGTTGTGGTCATCCCTATTGCTTTTCATGCTGGACAGGATATATTGGCACTTCAATTAATGATGGTCCGGGATGTTTGGCGCTGAGATGTCCTGATCCCACTTGTGGGGCTGCTGTTGGTCAAGATATGATTTATCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGACCGTTACCTTCTTAGGTCTTATATTGAAGACAATAAAAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAACATGCAGTTACTTTTGATGCTGGTAGTGGAAATTATGACGTATCTTGCCTATGTTCATATAGCTTTTGCTGGAACTGCACTGAGGAGGCTCACCGTCCAGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAATATGAACTGGATACTCGCTAACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATTGAAAAAAACCAAGGGTGTATGCACATGACATGCACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGCTTCTATGCTTGCAATCGATATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTTCACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAGTCACAGCTCAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGCAGGCGGGTGCTGAAGTGGACATATTCATATGGGTACTATTTACCTGAGCATGAACATGCCAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAAGAACTACAGCTATTCCTCAATGCTGATGGCCCATCCGGAGAATTCAATGACTTTCGCACAAAATTAGCTGGATTGACCAGTGTGACCAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAACGGTTTATCTGATGTGGATGGTAATGGAGCCGCATCCAGCAAGGCAACGAGCTCTAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACCATTCGAGCAAGCATGTCCAGCAGAATGACTGACGATAATCATTGGTCTTGTGAGCATTGTACCTATGCAAATGTCAGATCTGCGACCACTTGCCAGATGTGCAATCAACAGCGTCGATGA 1773 0.4433 MDSEDDMHDANDIESLDDDFYSGETEDAPMDYYSDYDDDADDYFDDADDSDRIESRRPEQNYAILKESDIRQRQEDDITRVATVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEMPVFQIPNSRELTCGICFDTYPRASIKTASCGHPYCFSCWTGYIGTSINDGPGCLALRCPDPTCGAAVGQDMIYLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEHAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYSYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSGEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDGNGAASSKATSSKNAAGSSKGRGGRGKGTIRASMSSRMTDDNHWSCEHCTYANVRSATTCQMCNQQRR* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00427 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Rops7g00427 590 MobiDBLite consensus disorder prediction 524 540 - -
Rops7g00427 590 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Rops7g00427 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Rops7g00427 590 CDD Rcat_RBR_ARI7-like 293 347 - -
Rops7g00427 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 222 IPR013083 -
Rops7g00427 590 MobiDBLite consensus disorder prediction 1 58 - -
Rops7g00427 590 Gene3D - 266 521 - -
Rops7g00427 590 SMART zf_4 564 588 IPR001876 -
Rops7g00427 590 MobiDBLite consensus disorder prediction 1 48 - -
Rops7g00427 590 Gene3D - 560 590 - -
Rops7g00427 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
Rops7g00427 590 SUPERFAMILY RING/U-box 134 220 - -
Rops7g00427 590 CDD BRcat_RBR_ANKIB1 215 279 - -
Rops7g00427 590 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Rops7g00427 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 436 IPR031127 GO:0004842|GO:0016567
Rops7g00427 590 SUPERFAMILY RING/U-box 208 277 - -
Rops7g00427 590 MobiDBLite consensus disorder prediction 524 559 - -
Rops7g00427 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Rops7g00427 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Rops7g00427 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Rops7g00427 590 SUPERFAMILY RING/U-box 289 337 - -
Rops7g00427 590 CDD RING-HC_ARI6-like 136 197 - -
Rops7g00427 590 SMART ibrneu5 274 344 IPR002867 GO:0008270
Rops7g00427 590 SMART ibrneu5 208 270 IPR002867 GO:0008270
Rops7g00427 590 Pfam Ariadne domain 357 518 IPR045840 -
Rops7g00427 590 ProSiteProfiles Zinc finger RING-type profile. 139 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00427 Rops-Chr7 5345642 5356076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00427 17 589 ARIADNE family AT1G65430 70.740 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00427 K11968 - gmx:100810427 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00427 7 5345642 5356076 Rops7g00427 7 5345642 5356076 ECH
Rops7g00427 7 5345642 5356076 Rops3g00685 3 8339562 8350163 PCT