Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00414 ATGAAAATTCAGTGTGATGTCTGTGAGAAAGCTTCTGCATCAGTGATTTGTTGTGCGGATGAGGCAGCTTTGTGTGCCAAATGTGACATTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTCCAGAGTCTATCAAACAAGCTTCCCAAATGTGACATATGCCAAGATAAGGCAGCATTCATATTTTGTGTTGAAGACAGAGCACTATTCTGTCAGGATTGTGATGAACCAATTCATTCAGCTGGCAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCAGAGTGGCCATGAGTTCTAATTGTACCAAAGACAATGAAAAAACTCACTTGGAGCCACCTAATGGGAATGCACAACTAGTTTCTGTGAAAATTCCTTCACAAGAAGTGCCTAACTTCACATCCTCTTGGGCTGTTGATGACTTATTGGAATTCACAGGCTTTGAATCACCTGACAGAAAGGAATCCCTGCAGTTTGGAGAGCTGGAATGGCTTGCAGACACGGGTCCTTTTGGTGAACAATTTACTCAGAAAGCCTTGGCTGCATCTGCTGAAGTCCCTCAGCTTCCAGTAACTCATATGAGCAGCGATGTTGCCTCTTACAGAATCTCCAAGTCCTACATGTCTCACAAAAGGCCCAGGATTGAAGTCCTAGAGGAAGATGATGAGTTCTCCACTGTGCCTGATCTTGGCTGA 720 0.4486 MKIQCDVCEKASASVICCADEAALCAKCDIEVHAANKLASKHQRLLLQSLSNKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVAMSSNCTKDNEKTHLEPPNGNAQLVSVKIPSQEVPNFTSSWAVDDLLEFTGFESPDRKESLQFGELEWLADTGPFGEQFTQKALAASAEVPQLPVTHMSSDVASYRISKSYMSHKRPRIEVLEEDDEFSTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00414 239 CDD Bbox1_BBX-like 5 47 - -
Rops7g00414 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Rops7g00414 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Rops7g00414 239 CDD Bbox1_BBX-like 56 98 - -
Rops7g00414 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Rops7g00414 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Rops7g00414 239 Gene3D Classic Zinc Finger 1 92 - -
Rops7g00414 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops7g00414 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00414 Rops-Chr7 5197796 5199804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00414 1 161 Orphan Transcription Factor Family AT1G06040 62.941 4.70e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops7g00414 zf-B_box 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00414 - - vun:114183169 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00414 7 5197796 5199804 Rops7g00414 7 5197796 5199804 ECH
Rops7g00414 7 5197796 5199804 Rops3g00664 3 8112289 8115387 PCT