Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00409 ATGCCACTTCCTAGCAAACCTGCAGAATGGGAAGAATGGGGAGGAAGCCCTTCCAACAACCTATGGGTTGGAAATCTATCCCCAGATGTAACGGACTCCGATCTCATGGACCTCTTCGCTCAATACGGTGCGCTTGATAGTGTCACCACCTATTCCTCTCGCAGTTACGCTTTCGTTTTCTTCAAGCGTATCGAAGATGCCAAGGCCGCTAAGACCAACTTGCAAGGCACTTCTTTGCGCGGGATTCCCCTCAAAATTGAATTTGCCAGACCGGCGAAGCCATGTAAAAATCTGTGGGTGGGTGGAATTAGCCCGGCTGTTACGAAGGATGAATTGGAATCTGAGTTTCGTAAATTTGGTACGATTGAGGATTTTAAGTTCTTCAGAGACCGGAATACTGCTTATGTTGAATTTCTCAATCTGGATGATGCTACTCGTGCCATGAAAATCATGAACGGAAAGCGATTAGGTGGGGACCAGATTCGTGTTGACTTCTTTCGATCACAATCTAATAAAAGAGATCCTATGGTTGATCATGGACAATTTCAGTCAAGATCACAGCATTCACAACCTTCAATGGGGAGGGATGGTCCACCTAGTAACATTTTGTGGATAGGCTTTCCTCCTTCCTTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATCGAGGGAATCAAGAGTTATCCTTCAAGACATTATTCGTTTGTTGAATTTAGAAGTGTTGATGAAGCTCGACGCGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGACCTGGTACATGGAAAAGATTACACTGGCTTTCATCATGGAAGTAAAGGGCCAATACCTGATGTGTTACTTAATGAGCATCCATTTCGACCACTACAAATGGATGTACTTGGTCATAGTCGTCCCCTAGTTCCAAATAATTTTTCTGGACAGTTGCCACCTGGTGGTATTATTGGACCTAACGTACCCATGCGACCTTTTGGTCCTCAAGGTCATGAACCTCTTATCTCTGGTCCCGAGTTTAATGAGATGGGCACACTCCACAAATTTCATGACAGTAGCTCTAAAGGTCAGATTGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGAATGCTTCCTTCTCCTGTACCTGGTATCAGGCCTCCTACAAGATCCACCTCTGGTGCATGGGATGTACTTGAGATGAACCAATTTCAGAGAGATTCTAAACGTTCAAGGACAGATGGTGCTTTGACCATTGGTGATGCTCCATTTCCCTTAAGGAATATAGATGATCGTGGATTAGGACTAGAGCAAACTTATGGAATTGATCCAGTTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGCAGGCCCTAGGATCCCAGCTGGAGTACCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACACTTGTTTGTCGTGCTAGATGTATACCTATCGGGAAAGGGATAGGGACTGAGCTTCCTGATGTTATCGATTGCGCAGCTAGGACAGGATTGGATATGCTCACGAAACACTATGCCGATGCAGCTGGTTTTGACATTGTTTTCTTTCTCCCAGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTCCGCTACCTCAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTGTTGATCACACCACTTTGTTTTTGGTACCTCCTTCTGATTTCCTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGATTATATGGTGTGGTTCTTAAATTTCCTCAAGTTCCAAGTAGCACACCAATGCAACAATCAATGCATTTGCCTTCGCCTTCGCCATCAACTCAGTATATGCAGCATATTCCTCCTACACAAGCTGAGTATGGTTCAATCTCTGTAAAGGAGGAACAGGTTTTACCGATGAATTATAACAGATTGTTGCATGAAGATTCCAAGGTTCCCCCAAAACTACTCCATCCAGCTTATACTCCTACTAATACTGTCTCTGCATCCCAAGCTGGAGTTACATTAACACCTGAGCTTATTGCAACTTTAACTTCTTTACTCCCTACAACTACACAATCATCGGCTGCTGTTGGTGCAACGACAGCAGTTGGCCCCTCGACTGTGAGGCCACCATTTCCTCCAGTTGCACCTAATGATGGAGATCAATCTCATTTGTGGAAACAAGATCATCAAATTGCAGATCCTCCTAGTCATCCTCCTCAACAGTTATGGAGTACGTACAACTTTCACAGCACTCAATATCAGCTTTATCCACAAGCATCTACTCCTAATCACCCTGCTCAAGTGGTCTCTGGCTCTGACAATTCTTATTTCCAAGATGCTGCCGGCCTGCAGCAGCTAGGTACTGTTTCATCCAGACCCATGCCTAATTTCGTCAGCCCTTCTCAAAGTGGACAGGTGGCTGTATCCCCTCAAGTCAGTCAGCAGTATCATGTTGAAGTCTCCCCCAGCACCCAGAAAGGCTATGGAGTGGTTCAGGGAACAGATGCCTCTGTCTTATATGGTTCTAAGACATTTCAGCAGCCTAATAATTTTATTGCCTCATCTAATCAAGTTCCCAGTGCTAATGCTTCGCAGCCACAAACTACGACGCCCTATATAGTGGACAAAGTTAACTCTGAGCCTCCAAATCAGCAACTTCAACCTGCTTTCTTTGGAGCTGGTCAGGGCATGTCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGTCAACGCTACAGTTCGCTGCCAACCTTCTCCTCCAGATACAGCAAAAGCAAACACAAGGAGGGCATGGTCCAGGAAATCAACAATAA 2874 0.4485 MPLPSKPAEWEEWGGSPSNNLWVGNLSPDVTDSDLMDLFAQYGALDSVTTYSSRSYAFVFFKRIEDAKAAKTNLQGTSLRGIPLKIEFARPAKPCKNLWVGGISPAVTKDELESEFRKFGTIEDFKFFRDRNTAYVEFLNLDDATRAMKIMNGKRLGGDQIRVDFFRSQSNKRDPMVDHGQFQSRSQHSQPSMGRDGPPSNILWIGFPPSFQIDEQMLHNAMILFGEIEGIKSYPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVHGKDYTGFHHGSKGPIPDVLLNEHPFRPLQMDVLGHSRPLVPNNFSGQLPPGGIIGPNVPMRPFGPQGHEPLISGPEFNEMGTLHKFHDSSSKGQIGPNWKRPSPPAPGMLPSPVPGIRPPTRSTSGAWDVLEMNQFQRDSKRSRTDGALTIGDAPFPLRNIDDRGLGLEQTYGIDPVIDGGGSGPKSHLGPAGPRIPAGVPGSVQPDIDHIWRGIIAKGGTLVCRARCIPIGKGIGTELPDVIDCAARTGLDMLTKHYADAAGFDIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFVDHTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPQVPSSTPMQQSMHLPSPSPSTQYMQHIPPTQAEYGSISVKEEQVLPMNYNRLLHEDSKVPPKLLHPAYTPTNTVSASQAGVTLTPELIATLTSLLPTTTQSSAAVGATTAVGPSTVRPPFPPVAPNDGDQSHLWKQDHQIADPPSHPPQQLWSTYNFHSTQYQLYPQASTPNHPAQVVSGSDNSYFQDAAGLQQLGTVSSRPMPNFVSPSQSGQVAVSPQVSQQYHVEVSPSTQKGYGVVQGTDASVLYGSKTFQQPNNFIASSNQVPSANASQPQTTTPYIVDKVNSEPPNQQLQPAFFGAGQGMSELEADKNQRYQSTLQFAANLLLQIQQKQTQGGHGPGNQQ* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00409 957 Gene3D - 93 196 IPR012677 -
Rops7g00409 957 CDD RRM_SF 21 87 - -
Rops7g00409 957 MobiDBLite consensus disorder prediction 378 396 - -
Rops7g00409 957 Gene3D - 8 92 IPR012677 -
Rops7g00409 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Rops7g00409 957 Pfam SPOC domain 484 601 IPR012921 -
Rops7g00409 957 SUPERFAMILY RNA-binding domain, RBD 94 272 IPR035979 GO:0003676
Rops7g00409 957 SUPERFAMILY RNA-binding domain, RBD 9 93 IPR035979 GO:0003676
Rops7g00409 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 162 IPR000504 GO:0003723
Rops7g00409 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 267 IPR000504 GO:0003723
Rops7g00409 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 82 IPR000504 GO:0003723
Rops7g00409 957 MobiDBLite consensus disorder prediction 171 199 - -
Rops7g00409 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Rops7g00409 957 Gene3D - 197 280 IPR012677 -
Rops7g00409 957 MobiDBLite consensus disorder prediction 350 406 - -
Rops7g00409 957 FunFam Flowering time control protein FPA 11 93 - -
Rops7g00409 957 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 89 - -
Rops7g00409 957 CDD RRM_SF 98 164 - -
Rops7g00409 957 MobiDBLite consensus disorder prediction 175 196 - -
Rops7g00409 957 FunFam flowering time control protein FPA 194 288 - -
Rops7g00409 957 SMART rrm1_1 20 87 IPR000504 GO:0003723
Rops7g00409 957 SMART rrm1_1 202 270 IPR000504 GO:0003723
Rops7g00409 957 SMART rrm1_1 97 164 IPR000504 GO:0003723
Rops7g00409 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00409 Rops-Chr7 5155351 5164015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00409 97 269 Eukaryotic Initiation Factors Gene Family AT4G34110 29.891 4.66e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00409 - - gmx:100806555 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00409 7 5155351 5164015 Rops7g00409 7 5155351 5164015 ECH
Rops7g00409 7 5155351 5164015 Rops3g00658 3 8061247 8073489 PCT