Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00405 ATGCCCAAGCAAATTCACGAGATTAAAGACTTCCTTCTAACTGCAAGGAGGAAGGATGCACGCTCCGTGAAAATCAAGAGGGGCAAAGATGTGGTCAAGTTCAAGGTTCGTTGCTCCAAGTACCTTTACACCCTGTGTGTGTTTGACTCTGAGAAGGCTGATAAGTTGAAGCAATCACTTCCTCCTGGTTTAAGCGTGCAGGACCTGTGA 210 0.4667 MPKQIHEIKDFLLTARRKDARSVKIKRGKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00405 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Rops7g00405 69 Gene3D - 1 69 IPR038464 -
Rops7g00405 69 FunFam 60S ribosomal protein L38 1 69 - -
Rops7g00405 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00405 Rops-Chr7 5118304 5119433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00405 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.203 7.54e-44 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00405 K02923 - rcu:8284757 137.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00405 7 5118304 5119433 Rops7g00405 7 5118304 5119433 ECH