Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00393 ATGGATGACCCATTTTCCCCCAAGGGAAGAGGAATTGGGTATTGGCAGTCTCCTATAGCTCAGATGGAGGGATCAACATCACTAGACGGTGGAATGAGCAATTCCATATCAGAGGAATTGCCTGGCAGCTTCTCTGAGCTCATGAACTTTGATACTTATGCTGGTTTATCCACTGGCCCATCCATGACTGATCAGATTTTAGCTAATGAGCTTCCATCATTTGCCTCGGTACCATATCCATCACCCGATGGATTCAATCTAGTCGAACAGAACAGTGGGCAATTTTTTAGTGGAAATTACAGCAATCTGGAAAGCACCCCCGCTTATGGGGAGAAAATCATGTGCCAGCAAATGGATACCCTATTTGGTTTATTAGATGACACAAATGATGCAAATAACTTAAATTCTAAGCAAAAAATTAATGGCTCTTCGCATCATCTTAATACCTTTGATACCGGCAATTACGTAATCTCCAGGCCCCCTGGTTTGTCTCTCGACGAGAGAATGCTGAAGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCTTTAAGCATGGTGGCCAAGTCATCTTAAGCACGAGTGAACAACCTTATTTACTAGATCAAATGCTTGCAAGTAAGAGTGAGTACTTGAGGGTTGAGCATGCAAGAAATCACAAGGTTCGTGGATCAATCGCATTTCCCATATTTGATCTGCACTCTGAACTGCCATGTTGTGCTGTACTGGAACTTGTCACTTCAAAGGAAAAACCTGATTTTGACCGAGAATTGGAAATTGTTCATCGTGCACTACAGCTTGTAAATTTGAGGACTACTATGCCTCTTCGACTTCTTCCTGAGTGTTTTTCAAACAATAAAAGAGATGCTTTAACAGAGATCGTTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCACTGGCATTGACTTGGATTCCCTGTTGTTACACTGATGGCACGAGAGGTGAAGCCTCAAGGATACAAGTTAAAGAGGGCGATTCAAGTTCTAGTGAAAAAAGCATTCTATGCATCGAAGAATCAGCTTGCTATATAACTGATAGAGCGATGGAAGGATTTGTCCATGCTTGCATTGAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAGAGCTCTTAAATCAAATCATCCTTTCTTCTGTCCTGATGTGAAGGCATATGATATTATAGAATATCCACTTGTCCATCATGCACGCAAGTACAATTTGAATGCTGCAGTTGCAGTTAGGCTAAGGAGCACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGGGTTCAGAACAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGTTGCTGAATCATCAGGAATAGCAAGCTCACAATTGGGATTTGAAAAGAAAAACATCCCCAGTTGTTTTCCTCTGCCTAGTAGAAACTCTCAAATACCATTAATAAATGGCAACCATGATTCTGTCCAGAAGATGTCACCGAAGGCATCTAACCTGAGAAACAATGGAAGTGAGCCTTCACGTAATCAGGAACGAAATGGATCAAGAAGGCAGGTTGAGAAAAATAGAGGTACATCAGAGAAGAATGTTAGCTTGAGTGTTATCCAGCAATACTTCTCTGGTAGTCTGAAGGATGCAGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCGTAATGGAATTTTAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTGAAGAAAATACAGACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGTGGGTTGAAGTTTGATCCCTCCTTGGGGGCGTTCGTGGCAGGAGGGTCAATCATCCAAGAAAGTGATGCACACAAAGGTCTCCTGTTCACTGAAAAAAGTACTATAAAAGACCCTGGGCCTATTACATCAGATGCAGTCTCAGTGCAGCCTGCACCTTGTAGTGGTGAGAATTCGGCAAATAAGTTGGAGGGAAAATTGAAGAAAACCAATGCTACTTCGGTTGACTGTAGTGAAGATTCAAAGTCAACGGCAATGAATGAGGGGTCTAGCCAAACAGCTAGTCTGTGGACCAAGGCACAGGATTTTCCTGAACAGGCTTGTTTGGGTTCTGATCTTGCAAAAGAAAGGGATAAATGGGTTATGAACAAAGGTGGTTTGAGAGTAGAAAAATTTAGATATAATATTGTACGCCAGAGTTCAAGCTCCTTCATTGCTGAGGAGATGGACATTGGTGTGGATGGGGATGATGAGGTTGTTGAACACAACCGCCCTACTTCTTCAAGCTTGACAGACTCGTCTAATGGCTCCAGTTCAATGATGCATGACAGTTCATCAGGTTCTCAGAGCTTTGAGAACCAGAATAAGTCCATAGGCAAATCAACTATCGTTGATAGTGGGTCAAAAATCATTGTCAAAGCCACCTATATAGAAGACACCATTCGTTTCAAGTTCGATCCAAGTGCAGGTTGTTTCAAGCTATATGAAGAAGTGGCAGCAAGATTCAAACTACAAAATGGGACATTCCAGCTCAAATATCTAGATGATGAGAAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAGTGTTTAGAAATAATGGATGATATGGACACACGTAGTGTGAGGTTTCTTGTTCGTGATATGCCTTGTGTTTTAAGCAGCTCTGGCAGCAGCAGTTTCTACTTGGGAGGCAACTCATAG 2799 0.4219 MDDPFSPKGRGIGYWQSPIAQMEGSTSLDGGMSNSISEELPGSFSELMNFDTYAGLSTGPSMTDQILANELPSFASVPYPSPDGFNLVEQNSGQFFSGNYSNLESTPAYGEKIMCQQMDTLFGLLDDTNDANNLNSKQKINGSSHHLNTFDTGNYVISRPPGLSLDERMLKALSFFKESAGGGILAQVWVPFKHGGQVILSTSEQPYLLDQMLASKSEYLRVEHARNHKVRGSIAFPIFDLHSELPCCAVLELVTSKEKPDFDRELEIVHRALQLVNLRTTMPLRLLPECFSNNKRDALTEIVDVLRSVCHAHRLPLALTWIPCCYTDGTRGEASRIQVKEGDSSSSEKSILCIEESACYITDRAMEGFVHACIEHHLEEGKGIAGRALKSNHPFFCPDVKAYDIIEYPLVHHARKYNLNAAVAVRLRSTYTNDDDYILEFFLPVNMRGGSEQQLLLDNLSGTMQRICRSLRTVSVAESSGIASSQLGFEKKNIPSCFPLPSRNSQIPLINGNHDSVQKMSPKASNLRNNGSEPSRNQERNGSRRQVEKNRGTSEKNVSLSVIQQYFSGSLKDAAKSIGVCPTTLKRICRRNGILRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSLGAFVAGGSIIQESDAHKGLLFTEKSTIKDPGPITSDAVSVQPAPCSGENSANKLEGKLKKTNATSVDCSEDSKSTAMNEGSSQTASLWTKAQDFPEQACLGSDLAKERDKWVMNKGGLRVEKFRYNIVRQSSSSFIAEEMDIGVDGDDEVVEHNRPTSSSLTDSSNGSSSMMHDSSSGSQSFENQNKSIGKSTIVDSGSKIIVKATYIEDTIRFKFDPSAGCFKLYEEVAARFKLQNGTFQLKYLDDEKEWVMLVNDSDLQECLEIMDDMDTRSVRFLVRDMPCVLSSSGSSSFYLGGNS* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00393 932 PANTHER PROTEIN NLP8 213 924 IPR045012 GO:0003700
Rops7g00393 932 MobiDBLite consensus disorder prediction 787 817 - -
Rops7g00393 932 SMART PB1_new 832 914 IPR000270 GO:0005515
Rops7g00393 932 MobiDBLite consensus disorder prediction 508 556 - -
Rops7g00393 932 MobiDBLite consensus disorder prediction 688 718 - -
Rops7g00393 932 Pfam PB1 domain 835 913 IPR000270 GO:0005515
Rops7g00393 932 ProSiteProfiles RWP-RK domain profile. 537 625 IPR003035 -
Rops7g00393 932 MobiDBLite consensus disorder prediction 508 537 - -
Rops7g00393 932 Gene3D - 828 913 - -
Rops7g00393 932 MobiDBLite consensus disorder prediction 664 718 - -
Rops7g00393 932 ProSiteProfiles PB1 domain profile. 832 914 IPR000270 GO:0005515
Rops7g00393 932 MobiDBLite consensus disorder prediction 538 552 - -
Rops7g00393 932 Pfam RWP-RK domain 557 605 IPR003035 -
Rops7g00393 932 MobiDBLite consensus disorder prediction 779 817 - -
Rops7g00393 932 SUPERFAMILY CAD & PB1 domains 823 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00393 Rops-Chr7 5034239 5041643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00393 1 929 NLP Transcription Factor Family AT2G43500 45.825 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops7g00393 PB1 7.9e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00393 - - gmx:100804426 1366.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00393 7 5034239 5041643 Rops7g00393 7 5034239 5041643 ECH
Rops7g00393 7 5034239 5041643 Rops3g00643 3 7912130 7918120 PCT