Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00386 ATGAAGTGCTTATGTGAGAAAGACTCTGGTCTATGTTCTGCTCATTCAACATCCCCCCATGTTCTTGGATGCCCATCGTGGGGGACTTCTTCTGAATCTGAAGTCCAAGAATCATCTATGTCCAAAAGTTTGAGCTTGAAAATGGATGTTCTGCCACAACAATACCACAAGAGCAAGGCACTGAGTTTTCAATTCCAAGAACAGGATTCATCTTCAACTCAATCGACTGGTCAATCTTATCCTGAAGTTGGTTCAGCACAATCGGGTCAAATTTCTTTCCAGCATAGTTCTACTGGTTCAATATTTAGTGGAACCGAGGAGAAGAGTTTAGGATGTCTCATCAGGTCATCTATGGGGAGCCAGGATGTCACCTACCCTCCACTACTGGATCACAACCAATCACTTGCTCATATTCCATTCCACTATGCTGATCCATGCTATAGTGGCCTACTAGCTGCCGCATATGGCCAACAGTCTAAGATTCATCATGCCCAGCTTATGGGAACTGTAGTTCGAATGCCTCTGCCGTCTGATCTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTTGAAGCACATAACAAACTCATCAAGGATCGGAAACCATATCTTCACGAGTCCCGCCATCGACATGCAGCAAAGAGAGCTAGAGGTGCTGGCGGCCGCTTTCTCAATACTAAAAAGCTCCAAGAATCAAAGCCTACTTCAGCAAACCATGGCCTAAATATTTCCAGCTCTACTTGTTTGAATTTGAGTGGAAATATGTCAGAATCTAAAATGCATCATCAGGTTGAAAACTACAGAGATGGTGCTTCATCCACCACCTGTTCTGATGTCACATATGCATCTAATAGGAAACAGGAGTCACACTTCAAGTTATGTGGTTACCCTTCTCACAGTGGAAGGAACATGCAGGATTATACAACTGATAAGGGTGGTGGTGTGAATCAACACCACCTATCTGTCTTCATGTGA 1017 0.4356 MKCLCEKDSGLCSAHSTSPHVLGCPSWGTSSESEVQESSMSKSLSLKMDVLPQQYHKSKALSFQFQEQDSSSTQSTGQSYPEVGSAQSGQISFQHSSTGSIFSGTEEKSLGCLIRSSMGSQDVTYPPLLDHNQSLAHIPFHYADPCYSGLLAAAYGQQSKIHHAQLMGTVVRMPLPSDLTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHRHAAKRARGAGGRFLNTKKLQESKPTSANHGLNISSSTCLNLSGNMSESKMHHQVENYRDGASSTTCSDVTYASNRKQESHFKLCGYPSHSGRNMQDYTTDKGGGVNQHHLSVFM* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00386 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 305 IPR001289 GO:0003700|GO:0006355
Rops7g00386 338 ProSitePatterns NF-YA/HAP2 subunit signature. 185 205 IPR018362 GO:0003677|GO:0016602
Rops7g00386 338 PRINTS CCAAT-binding transcription factor subunit B signature 214 237 IPR001289 GO:0003700|GO:0006355
Rops7g00386 338 PRINTS CCAAT-binding transcription factor subunit B signature 183 205 IPR001289 GO:0003700|GO:0006355
Rops7g00386 338 MobiDBLite consensus disorder prediction 66 89 - -
Rops7g00386 338 Gene3D - 180 241 - -
Rops7g00386 338 ProSiteProfiles NF-YA/HAP2 family profile. 180 240 IPR001289 GO:0003700|GO:0006355
Rops7g00386 338 SMART cbf3 179 240 IPR001289 GO:0003700|GO:0006355
Rops7g00386 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 237 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00386 Rops-Chr7 4976189 4980454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00386 14 336 CCAAT-HAP2 Transcription Factor Family AT1G17590 45.401 3.01e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops7g00386 CBFB_NFYA 3.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00386 K08064 - gmx:100500765 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00386 7 4976189 4980454 Rops7g00386 7 4976189 4980454 ECH
Rops7g00386 7 4976189 4980454 Rops4g01864 4 43321801 43324305 PCT
Rops3g00584 3 7259187 7261715 Rops7g00386 7 4976189 4980454 PCT