Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00385 ATGGAGGCACGAGGTCGGTCCGTGGAAGATATATTCGAGGATTTCAAAGGGCGAAGAGCAGGCATCATCAAAGCCCTTACCACTGATGTTGAAGATTTCTACAGCCAATGTGATCCAGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGAGCAATGGGAAGTAAATCTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTGCCTTCTATTTTGGGGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGACTATTCAATATGATCAATGAACAACCAACAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGTGCGGGCTCCTGAAACTCAGGGTAGACAATCAAAGACATTACAACCAAAAGATGAGGACGAAGGGCTGGAAGAGCAAGATGATGATGAACATGGAGATACCTTGTGTGGCGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCTAA 747 0.4364 MEARGRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKADRKRLFNMINEQPTIFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKVRAPETQGRQSKTLQPKDEDEGLEEQDDDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00385 248 FunFam PHD finger alfin-like protein 188 244 - -
Rops7g00385 248 CDD PHD_AL_plant 195 245 IPR044104 -
Rops7g00385 248 SMART PHD_3 195 243 IPR001965 -
Rops7g00385 248 MobiDBLite consensus disorder prediction 141 191 - -
Rops7g00385 248 PANTHER CPG BINDING PROTEIN 6 248 IPR045104 GO:0006355|GO:0042393
Rops7g00385 248 MobiDBLite consensus disorder prediction 141 171 - -
Rops7g00385 248 Pfam PHD-finger 196 245 IPR019787 -
Rops7g00385 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Rops7g00385 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Rops7g00385 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Rops7g00385 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Rops7g00385 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00385 Rops-Chr7 4970275 4974892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00385 6 248 Alfin-like Transcription Factor Family AT3G42790 75.720 7.18e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Rops7g00385 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00385 K26274 - gmx:100170696 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01865 4 43347410 43351998 Rops7g00385 7 4970275 4974892 ECH
Rops7g00385 7 4970275 4974892 Rops7g00385 7 4970275 4974892 ECH
Rops7g00385 7 4970275 4974892 Rops4g01865 4 43347410 43351998 PCT