Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00374 ATGGGAAATCAGAAGCAGAAGTGGACGGCGGAGGAAGAAGACGCGTTGCATCGCGGAGTTCAGAAGCACGGTGTCGGAAAGTGGAAGAACATTCTCAAAGATCCCGAGTTTGCTCCTTCCCTCGCTAACCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATTTAAATGTTGGCAATGGTCAGGGTTCTAAAGAGAAGTCTAGGACTCCCAAGATCAAAACAACACCTCCTGCTCCTGCTTCAGTTTCCCCTCTGCAAATTGCAGCAACTCCTGCTTCTTCTGCTCCTGCTTCTCAAGCTCAAACTCAAACTCAAACTGAAACTCACCATTCTTCTGATAATGCCGACGATGTCCAAAGTCCTCTACGGTACAATACAATGGTTTTTGAAGCTTTATCAACGATCAAGGACGCTAATGGTTCTGACATAAATGCCATTATTAGTTACATTGAGCAAAAGCACAAAGTTCCTCCAAATTTCAGAAAGGCATTAGGCTCAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTAGAAAATTGTTACAAGATAAAAAAGGACACCCCATCGGAGATCAAGTCACCTGCACAGCAATCACCAGCCTCTAATTTTTCGACATCTGATGAGACAATAAAGCATGCTGCTGATAATGCAGCCTACAGAGTTGCTGAAGCTGAGAACAAATCGTTTTTGGCCGCTGAGGCAGTCAAGGAGGTGGAAAGAATCTCGAAGCTGGCTGCAGATAATGATTCAATGTTACAGCTTGTGAAAGAGATTTATGAAAAATGTTCGCGTGGTGAAATTGTCCTCTTGGTTTAA 828 0.4384 MGNQKQKWTAEEEDALHRGVQKHGVGKWKNILKDPEFAPSLANRSNIDLKDKWRNLNVGNGQGSKEKSRTPKIKTTPPAPASVSPLQIAATPASSAPASQAQTQTQTETHHSSDNADDVQSPLRYNTMVFEALSTIKDANGSDINAIISYIEQKHKVPPNFRKALGSRLRRLVSQGKLEKVENCYKIKKDTPSEIKSPAQQSPASNFSTSDETIKHAADNAAYRVAEAENKSFLAAEAVKEVERISKLAADNDSMLQLVKEIYEKCSRGEIVLLV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00374 275 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Rops7g00374 275 MobiDBLite consensus disorder prediction 75 110 - -
Rops7g00374 275 SUPERFAMILY "Winged helix" DNA-binding domain 122 197 IPR036390 -
Rops7g00374 275 MobiDBLite consensus disorder prediction 194 211 - -
Rops7g00374 275 Gene3D - 119 200 IPR036388 -
Rops7g00374 275 CDD SANT_TRF 6 57 - -
Rops7g00374 275 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops7g00374 275 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Rops7g00374 275 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Rops7g00374 275 SMART sant 4 59 IPR001005 -
Rops7g00374 275 MobiDBLite consensus disorder prediction 1 120 - -
Rops7g00374 275 MobiDBLite consensus disorder prediction 7 21 - -
Rops7g00374 275 Gene3D - 2 58 - -
Rops7g00374 275 MobiDBLite consensus disorder prediction 192 211 - -
Rops7g00374 275 Pfam linker histone H1 and H5 family 124 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops7g00374 275 PANTHER SINGLE MYB HISTONE 4 1 274 IPR044597 GO:0003691
Rops7g00374 275 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops7g00374 275 FunFam Telomere repeat-binding factor 1 2 58 - -
Rops7g00374 275 FunFam Telomere repeat-binding factor 1 8 85 - -
Rops7g00374 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00374 Rops-Chr7 4817968 4824037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00374 1 274 Single Myb Histone (SMH) Gene Family AT1G17520 47.931 1.78e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops7g00374 Linker_histone 7.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00374 K09422 - pvy:116109826 319.701