Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops7g00373 | ATGTTTGAAAGTTCTTTTATGGCAGGTTTCGCTCCAGAAGGATCACAATTTGATGCTCGGCAATTTGATACTAAGATGAATGAATTGCTTTCTGCTGATGGACAAGAATTCTTCACCTCGTATGATGAAGTCTATGATAGTTTTGATGCAATGGGATTACAAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAGCAGGCTCAATCTGGAACTGGGAAGACAGCAACATTTTGTTCGGGCATTTTGCAACAGCTTGATTATGGATTGGTTCAGTGCCAGGCTCTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTTCACGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCAGGGCGTGTGTTTGACATGCTGAGGAGACAGTCTCTTCGCCCAGATCACATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTTCAGCTACTGCCAGGTAAAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCACCAGAAGCCCTGGAGATTACAAGGAAGTTCATGAATAAGCCAGTAAGAATCCTGGTAAAGCGTGATGAATTGACCCTTGAAGGTATCAAGCAGTTTTATGTGAATGTTGATAAGGAAGAGTGGAAACTAGAGACACTATGCGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTCGTGAATACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGAGAAGCAATGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTTCGCTCTGGCTCTTCAAGAGTTCTAATTACCACTGACCTCTTGGCTCGTGGTATTGATGTGCAGCAAGTGTCTCTGGTCATAAACTATGATCTGCCTACACAACCTGAGAATTATCTTCATCGTATAGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATGCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGAGTGTAGAGGAATTGCCATCAAATGTTGCTGATCTCCTCTGA | 1260 | 0.4397 | MFESSFMAGFAPEGSQFDARQFDTKMNELLSADGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIRMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVSVEELPSNVADLL* | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops7g00373 | 419 | CDD | DEADc_EIF4A | 50 | 248 | - | - | |
Rops7g00373 | 419 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 44 | 403 | - | - | |
Rops7g00373 | 419 | FunFam | Eukaryotic initiation factor 4A-II | 34 | 253 | - | - | |
Rops7g00373 | 419 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724 | |
Rops7g00373 | 419 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 258 | 419 | IPR001650 | - | |
Rops7g00373 | 419 | Gene3D | - | 255 | 419 | IPR027417 | - | |
Rops7g00373 | 419 | CDD | SF2_C_DEAD | 259 | 389 | - | - | |
Rops7g00373 | 419 | SMART | ultradead3 | 65 | 262 | IPR014001 | - | |
Rops7g00373 | 419 | FunFam | Eukaryotic initiation factor 4A-III | 254 | 419 | - | - | |
Rops7g00373 | 419 | Pfam | Helicase conserved C-terminal domain | 272 | 380 | IPR001650 | - | |
Rops7g00373 | 419 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 115 | 400 | IPR027417 | - | |
Rops7g00373 | 419 | Pfam | DEAD/DEAH box helicase | 71 | 232 | IPR011545 | GO:0003676|GO:0005524 | |
Rops7g00373 | 419 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 247 | IPR014001 | - | |
Rops7g00373 | 419 | Gene3D | - | 36 | 254 | IPR027417 | - | |
Rops7g00373 | 419 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 193 | 201 | IPR000629 | - | |
Rops7g00373 | 419 | SMART | helicmild6 | 299 | 380 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops7g00373 | Rops-Chr7 | 4811842 | 4814407 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops7g00373 | 7 | 419 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 89.130 | 0.0 | 769 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops7g00373 | K03257 | - | gmx:100809395 | 809.29 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops7g00373 | 7 | 4811842 | 4814407 | Rops4g01921 | 4 | 44549125 | 44554995 | PCT |