Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00361 ATGGTTTTAGTTGAGGGTAGGGAAAAAAAGGCTCAAAGTTTTGACAAAAGTTGGATGGATTATTATCTTCCCCAACACTCGCAATTGGAATCTGAGCATGCCCCCTACAATGTTGGGCACAAAGAAGAATTTGATCAAAGAGGGCATCATGGTTTTGATGGCAGTGATGATGAGCCAGATAGCAGCAACGTAAAGCCTTCGTTCAATCGGCGCGATTCCTCTTCAGGAAAACTCTTCGTTGGAGGCATATCTTGGGAGACTTCTGAAGAGTCATTTTTTAAATACTTCAAAAAATACGGAGAAGTAACAGATTCAGTGATAATGATGAATAAACATTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTGCTGATTCAGCTGTTGCAGATGAAGTTTTGGCACAGGAACATACCATAGATGGAAGAGTGGTTGAGGTCAAGAGGACAGTCCCTAGGGAGGACATGGAAGTTATTGGAGTATTAAAAACAAAGAAGATATTTGTCGGTGGAATACCCCAGTTTTTCACTGACGATGAGTTGAAGGAGTACTTTTCACCTTATGGTAATATTGTTGAGTACCAAATTATGCTAGATCATAATACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCAGTGGAAAAGGTCTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATTACAATAGCACCTCACGAAAGTCATATGGTGGTTTTGGCAATGGAATGGATGAATTTGGTGGTTATAGTTCTAGAAATCGTAATCATGGAAGAAGGGGTGGACAGTATACAGATTCTGGCATGAGTGGGGCATATAGCCATTTTGAGGGTAGCTATAGTGGAAGCTCTACTGCTGCTTATGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTGGGCCAATGTATTGCTTTGGAGGTTATGGAATCAATTCTTATAGTAATCCTGGTGGTTATGGTGGCATGATGGCCTATGGAGATGGTAATGCATATGGAAGAGCTGGCAGTTTCAATCGTGGTGGTGGCCATGACAGTGGCAAAGTGGCTGAGAAAGATGATGGTCCTACCACTGGAAGATACCATCCTTATTGGAAGTGA 1167 0.419 MVLVEGREKKAQSFDKSWMDYYLPQHSQLESEHAPYNVGHKEEFDQRGHHGFDGSDDEPDSSNVKPSFNRRDSSSGKLFVGGISWETSEESFFKYFKKYGEVTDSVIMMNKHSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEVIGVLKTKKIFVGGIPQFFTDDELKEYFSPYGNIVEYQIMLDHNTGRSRGFGFVTFDNEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDYNSTSRKSYGGFGNGMDEFGGYSSRNRNHGRRGGQYTDSGMSGAYSHFEGSYSGSSTAAYGGYCGYGYGFGYGGPMYCFGGYGINSYSNPGGYGGMMAYGDGNAYGRAGSFNRGGGHDSGKVAEKDDGPTTGRYHPYWK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00361 388 MobiDBLite consensus disorder prediction 367 381 - -
Rops7g00361 388 Gene3D - 74 157 IPR012677 -
Rops7g00361 388 MobiDBLite consensus disorder prediction 32 75 - -
Rops7g00361 388 MobiDBLite consensus disorder prediction 364 388 - -
Rops7g00361 388 MobiDBLite consensus disorder prediction 35 65 - -
Rops7g00361 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 243 IPR000504 GO:0003723
Rops7g00361 388 SUPERFAMILY RNA-binding domain, RBD 68 156 IPR035979 GO:0003676
Rops7g00361 388 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 46 387 - -
Rops7g00361 388 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 157 292 - -
Rops7g00361 388 FunFam Heterogeneous nuclear ribonucleoprotein 1 75 156 - -
Rops7g00361 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 235 IPR000504 GO:0003723
Rops7g00361 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 145 IPR000504 GO:0003723
Rops7g00361 388 SMART rrm1_1 166 239 IPR000504 GO:0003723
Rops7g00361 388 SMART rrm1_1 77 148 IPR000504 GO:0003723
Rops7g00361 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 152 IPR000504 GO:0003723
Rops7g00361 388 SUPERFAMILY RNA-binding domain, RBD 163 252 IPR035979 GO:0003676
Rops7g00361 388 Gene3D - 161 305 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00361 Rops-Chr7 4709049 4711829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00361 62 240 Eukaryotic Initiation Factors Gene Family AT1G71770 27.411 1.89e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00361 K12741 - gmx:100818080 523.857