Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00351 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGCAACAGAACGGAAGTTGGTAACAATTATCCTCAACAATACTTTGCTCCACCACCAACCCAAACTCAGCCTCCACTTAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTGTCGCCTTGTCTCCAAAGAGTCTTCTGGCCACTAATAGGTTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGACCAGAATCTTCAACTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGCAGAGAGCAAACAAAGAGATAAGGAAGAAGGTGTATGTGTGCCCAGAACCCAGTTGTGTCCACCATGACCCATCAAGGGCCCTTGGGGACTTAACTGGTATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAAACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGATGAGAGTTCAAGAGCTGTGACACTTCTTCCCTCTCCAACTCCAACTCCTCCTCTTCAACCTGCCATGAATTTCCAAACTCAAGATACCCCTTTGAAGAAAGAGCAGCAAAGTTTCAACCTTCCTTGGCTTGCATGCCCCCCTGGCCCACCACCAACCATGGATCTCTCCTCCTCATCCTCATCAATCTTCTCTCCAACCCCAAGGTTGCATCAAGATCTAAGCCTCCATCAAAACCCTAACCCTAGACTTGGTCCCACTCTTCCTGCTGCATACCAACCAGCTCCTTCCCCTCACATGTCAGCCACAGCGTTGCTTCAGAAAGCAGCTCAGATGGGTGCAACCATGACCCACCACCAGGCTCACGTGTCTGCTGCTGACTCTGCCAATGGTGGCAACATCTCAAGTGGTAATTTTGGTTTGAATTTGTCCTCACGTGAAGACCAGATGACCACTACCACTACCCCTTTTGGGAATAAAGCAGCTGCTACTACTCCCTCATCACTCCTTCATCATGTTATCAACTCTTTCTCTTCTGGCTTTGAAGCAACTTCTTCTTTTCCTGAGATGAACAATTCAAACAAAGATCATTCCATGACAAAAACAACCACAGGAGGAAATGAATCTTTGACTAGAGATTTCTTGGGTCTTAGACCCCTTTCTCACACTGATATCCTTATGGGACACTGCATGAACTCCTTCCATGACCAACAAAGCCAATCCCAAAACCCATGGCAAGGTTAG 1341 0.4653 MSNLTSASGEASASSGNRTEVGNNYPQQYFAPPPTQTQPPLKKKRNLPGNPDPEAEVVALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKEIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALADESSRAVTLLPSPTPTPPLQPAMNFQTQDTPLKKEQQSFNLPWLACPPGPPPTMDLSSSSSSIFSPTPRLHQDLSLHQNPNPRLGPTLPAAYQPAPSPHMSATALLQKAAQMGATMTHHQAHVSAADSANGGNISSGNFGLNLSSREDQMTTTTTPFGNKAAATTPSSLLHHVINSFSSGFEATSSFPEMNNSNKDHSMTKTTTGGNESLTRDFLGLRPLSHTDILMGHCMNSFHDQQSQSQNPWQG* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00351 446 Gene3D Classic Zinc Finger 51 118 - -
Rops7g00351 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Rops7g00351 446 FunFam protein indeterminate-domain 12-like 50 118 - -
Rops7g00351 446 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Rops7g00351 446 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Rops7g00351 446 MobiDBLite consensus disorder prediction 1 31 - -
Rops7g00351 446 MobiDBLite consensus disorder prediction 1 54 - -
Rops7g00351 446 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Rops7g00351 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 432 IPR031140 -
Rops7g00351 446 SMART c2h2final6 112 142 IPR013087 -
Rops7g00351 446 SMART c2h2final6 71 93 IPR013087 -
Rops7g00351 446 SMART c2h2final6 147 167 IPR013087 -
Rops7g00351 446 Gene3D Classic Zinc Finger 125 204 - -
Rops7g00351 446 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00351 Rops-Chr7 4576538 4579442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00351 1 432 IDZ Gene Family AT1G55110 50.658 2.39e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00351 zf-C2H2_jaz 6.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00351 K25870 - qsu:111995117 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00351 7 4576538 4579442 Rops4g01973 4 45487213 45490107 PCT