Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00347 ATGAACAACAGTATCTCAAGAAATGGCAGCAGCACCACACAGGCTTGCGCTGCTTGTAAGTACCAACGCAGGAAGTGCGGACCTAACTGCCTTCTAGCACCATATTTTCCTCACGATCGTCAAAAGCAATTCCTCAATGCCCATAAACTATTTGGGGTTGGCAAAATCAATTCCATGATTAAGTCTGTTCAACCTCCTTATAGAGACATTACCATGAGCACTATCATATATCAATCTGACATGCGTGCCATTGATCCTGTTGGAGGCTGTTACAATATTATACAACAATTACAATCTCAGATTGAATACTGCAAGGCAGAGCTTCATTTTGTCCTTCAACAACTTGCTATTTTCCGAGCACAAGCTAACAATTATGATGTTATTAATGCAGATGCTGCTGCTGTTTTTGGCCCAACTCATTGTCATTATCTTGAACAAATGACACAACCTGAACAATATATTAACACCAATTACAATCCTTTACAAGAAGAAGTTAATATTATGTGGTCAGACTCTATACCTTTATCATCGTTGTCATTGCAGGATCAAAAGGAAGGACATGTTGGTGATGATGAGGATGATCAAAAGCCTATTCTTGACCTAATAAATGACATGAATTATGATCCCAGCAGCAGAAGTATTAATCACATGCAGTGA 657 0.3881 MNNSISRNGSSTTQACAACKYQRRKCGPNCLLAPYFPHDRQKQFLNAHKLFGVGKINSMIKSVQPPYRDITMSTIIYQSDMRAIDPVGGCYNIIQQLQSQIEYCKAELHFVLQQLAIFRAQANNYDVINADAAAVFGPTHCHYLEQMTQPEQYINTNYNPLQEEVNIMWSDSIPLSSLSLQDQKEGHVGDDEDDQKPILDLINDMNYDPSSRSINHMQ* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00347 218 Pfam Lateral organ boundaries (LOB) domain 15 110 IPR004883 -
Rops7g00347 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 152 - -
Rops7g00347 218 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00347 Rops-Chr7 4505817 4513936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00347 14 125 AS2 family AT3G13850 67.857 2.08e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops7g00347 LOB 3.8e-34 No_clan