Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00330 ATGGCATCTCAAATCCAATACGATGTCTTCATTAGCTTTAGAGGCACAGACATACGCTCTACTTTTCTTAGCCATTTGAAAAAGGAAATGCGGCAGAAGCAAGTTGATGCTTTCGTGGATGACAAACTTGAAAGAGGAGATGAAATATCACCTGCTCTTCTCAAAGCCATTGAAGAATCACTTATTTCTTTGGTAATATTCTCCAAAGACTATGCTTCTTCAAGGTGGTGCTTGGAAGAGCTTGTGAAAATAATTGAATGCAAGGAAAGGAATAAACAAATTGTGATTCCTGTTTTCTACAACATAGATCCATCGGATGTACGGCACCAAAAAGGGACTTACAAAGATGCATTGGCTAAACATGAAAGAAATGAAGGAAACCTGGACAAGGTGCCAAATTGGAGATCTGCTTTGAATAAAGCTGCTAATCGTTCTGGATTTTGCTCATCAAACTTTCCGGATGAAGCTGAGCTTATAGAAGAAATTGCCAAACATTTGTTGTCCAAGTTGAATCTTATGTACCAAAGTGGGTCAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGATGTGGAGTCACTATTGCTCCAAGGGTCAACAACAGATGTTCGTGTCATTGGGATTTGGGGCATGGGCGGTATCGGTAAGACAACTATCGCAGATGCAATATATAATCGTCTTTGTTTTGAATATGATGGGTGTTGCTTTATGGCCAACATAACGGAAGAATTAGAGAAACGTGGAATGATTTATCTGAAGAATAAAATTCTCTCTACATTACTAAAGGAAAATCTAAATATTGACACACCTATTGGAGTCCCCCCTTATGTTAAGAGAAGGTTGGGTCGTAAGAAGGTTCTTCTTGTTCTTGATGACATCAATGATTCAGAACACCTACAAAATTTAGTTGGAGCACTTCATTTGTTTGGATCTGGTAGCAGAATCATTGTAACAACTAGAGACAAGCAAGTGCTTAGTAACAAAGTTGACAATGACAGTATATATGAGGCTAGGGCATTAAGCTTCAATGAAGCTAATGAACTTTTCATTTCCAATGCCTTTAAAGAAAATTGTCTTGACATGGAGTGGATTGAGCTATCAGAAAGTGTGATTCAATATGCTGGTGGAAACCCATTAGCTTTAAAAGTGTTGGGTTCTTTTCTTTGTGGTAAAAGCAAAAGGGAATGGGAAAGCCAATTGCAGAAACTTGAAAAAATGCCTCTCTCCAAAATTCAAAATGTATTGAGGTTGAGTTATGATAAACTTGATCGAGAAGAGAAGGAAATATTTCTATATATTGCATGTTTTTTGAAAGGATATGAATTTCAACCAATAATATCTCTTCTTGATGCTTGTGGTTTCTCAACAATTATTGGGTTGAAAGTCCTTCAAGACAAAGCCCTTATAATTGGAGCCAAGGACTTTGGAAGGAGATCAATTGTATGGATGCATGACTTGATACAGGAAATGGGTCGGGAGATCGTTCGAGAAGAATGTGTTAAAGACCCTGGGCAACGCAGTAGGTTATGGGATCCTAATGATATTCGTCAAGTATTTAAAAATAACACGGGAACTGATGCCATTAAAAGCATAACTCTGAACATCTCAAAATTTGAAAATCTTGTTGAGCTCAATATGATTGACAGCCGAGTGGAAAAACTCTGGGATGGGACCCAGAATCTTCAAAATTTTAAAAAAATTGACCTCAGTGGTTCTGAATATCTGCTAGAGCTCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAAGATTTTCTTGAAGGCCATCACTATGAAGATGATAGCACTGGAGCCAACGGCAGATCTTAG 1827 0.3799 MASQIQYDVFISFRGTDIRSTFLSHLKKEMRQKQVDAFVDDKLERGDEISPALLKAIEESLISLVIFSKDYASSRWCLEELVKIIECKERNKQIVIPVFYNIDPSDVRHQKGTYKDALAKHERNEGNLDKVPNWRSALNKAANRSGFCSSNFPDEAELIEEIAKHLLSKLNLMYQSGSTDLVGIEERIADVESLLLQGSTTDVRVIGIWGMGGIGKTTIADAIYNRLCFEYDGCCFMANITEELEKRGMIYLKNKILSTLLKENLNIDTPIGVPPYVKRRLGRKKVLLVLDDINDSEHLQNLVGALHLFGSGSRIIVTTRDKQVLSNKVDNDSIYEARALSFNEANELFISNAFKENCLDMEWIELSESVIQYAGGNPLALKVLGSFLCGKSKREWESQLQKLEKMPLSKIQNVLRLSYDKLDREEKEIFLYIACFLKGYEFQPIISLLDACGFSTIIGLKVLQDKALIIGAKDFGRRSIVWMHDLIQEMGREIVREECVKDPGQRSRLWDPNDIRQVFKNNTGTDAIKSITLNISKFENLVELNMIDSRVEKLWDGTQNLQNFKKIDLSGSEYLLELPDFSKASNLEEDFLEGHHYEDDSTGANGRS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00330 608 Gene3D - 160 333 IPR027417 -
Rops7g00330 608 PRINTS Disease resistance protein signature 205 220 - -
Rops7g00330 608 PRINTS Disease resistance protein signature 559 575 - -
Rops7g00330 608 PRINTS Disease resistance protein signature 280 294 - -
Rops7g00330 608 PRINTS Disease resistance protein signature 374 388 - -
Rops7g00330 608 SUPERFAMILY "Winged helix" DNA-binding domain 409 519 IPR036390 -
Rops7g00330 608 Gene3D - 339 423 IPR042197 -
Rops7g00330 608 ProSiteProfiles TIR domain profile. 5 170 IPR000157 GO:0007165
Rops7g00330 608 SUPERFAMILY L domain-like 482 589 - -
Rops7g00330 608 SMART till_3 6 144 IPR000157 GO:0007165
Rops7g00330 608 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 172 - -
Rops7g00330 608 Pfam NB-ARC domain 187 422 IPR002182 GO:0043531
Rops7g00330 608 Gene3D - 1 141 IPR035897 -
Rops7g00330 608 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 147 IPR035897 -
Rops7g00330 608 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 590 IPR044974 GO:0006952
Rops7g00330 608 Pfam TIR domain 6 182 IPR000157 GO:0007165
Rops7g00330 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 433 IPR027417 -
Rops7g00330 608 Pfam Leucine Rich Repeat 540 559 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00330 Rops-Chr7 4274865 4282648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00330 1 535 WRKY Transcription Factor Family AT4G12020 30.427 2.33e-69 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00330 - - ccaj:109805840 803.127