Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00328 ATGAGCCGTTACGACAGCCGCTCCGGCGACCCTGCTTCCTACCGCGACCGTAGAAGTGACTCAGGGCTAGGTGCACCTGCACCTGCACCTGCTGGCTATGGTGGTTCGAGCAGAAGAGACCATGACGACGGTGGTTCAGGTTCCCCTAGGAAATTCAATTTGGATGGTTTGCCTCATTTCGAGAAAAACTTCTACAACGAATCGCCAACCGTTAGGTCAATGACGGAGGCTGAGGTTGATGAGTATCGCCGCCGCCGTGAAATCACCGTTGAAGGTCGAGATGTCCCTAAACCTGTCAAGACCTTTCACGATGTTGGTTTTCCAGAGTATGTGTTGCAAGAAGTTAAGAAAGCTGGCTTTGTGGAACCTACGCCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTCATTGGAATTGCCGAAACAGGATCAGGGAAGACGCTTGCTTACTTGTTGCCTGCCATAGTGCATGTTAATGCCCAGCCAATTCTAGATCCTGGGGATGGGCCTATTGTATTAGTTTTGGCCCCAACACGGGAACTTGCTGTGCAAATACAACAAGAGTCTACCAAGTTTGGTGCATCATCAAGGATTAAGAGTACATGCATATATGGTGGGGTTCCAAAGGGGCCTCAAGTGCGTGATCTCCAGAAAGGCGTTGAAATTGTAATTGCCACTCCCGGAAGGTTAATTGATATGATTGAGTCAAATCATACGAATTTGCGGAGGGTCACGTACCTGGTATTGGATGAAGCTGATAGAATGTTGGACATGGGGTTTGATCCTCAGATACGGAAGATTGTCTCTCAGATTCGTCCTGACCGTCAAACTTTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGTCAAGGCAATTCCTTTATAACCCATACAAAGTAATTATAGGTTCTTCAGATTTAAAAGCTAACCATGCTATACGGCAATATGTTGACATTGTTCCTGAAAAGCAGAAATATGATAAGTTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGGTGTGACCAGATTACCAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCTGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGGAAGAGTCCTATAATGACCGCAACAGATGTTGCAGCTCGCGGTTTAGATGTGAAGGATGTAAAATATGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACGTTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTTGAGGAAGCTGGACAGAGAGTAAGTCCTGAATTGGCAGCAATGGGGCGCGGGGCACCTCCTCCACCTTCAGGAGGCTTCCGAGACCGTGGGAAGGGTTATGGCAGTGGTCGCCCCTGGAGCTGA 1515 0.4759 MSRYDSRSGDPASYRDRRSDSGLGAPAPAPAGYGGSSRRDHDDGGSGSPRKFNLDGLPHFEKNFYNESPTVRSMTEAEVDEYRRRREITVEGRDVPKPVKTFHDVGFPEYVLQEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQESTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLSRQFLYNPYKVIIGSSDLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGGFRDRGKGYGSGRPWS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00328 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 306 IPR014001 -
Rops7g00328 504 MobiDBLite consensus disorder prediction 1 17 - -
Rops7g00328 504 Pfam DEAD/DEAH box helicase 124 295 IPR011545 GO:0003676|GO:0005524
Rops7g00328 504 CDD SF2_C_DEAD 319 449 - -
Rops7g00328 504 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 79 478 - -
Rops7g00328 504 FunFam ATP-dependent RNA helicase RhlB 310 482 - -
Rops7g00328 504 Pfam Helicase conserved C-terminal domain 331 440 IPR001650 -
Rops7g00328 504 CDD DEADc_DDX5_DDX17 111 306 - -
Rops7g00328 504 FunFam probable ATP-dependent RNA helicase DDX17 62 309 - -
Rops7g00328 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 479 IPR001650 -
Rops7g00328 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 456 IPR027417 -
Rops7g00328 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 252 260 IPR000629 -
Rops7g00328 504 SMART ultradead3 119 322 IPR014001 -
Rops7g00328 504 MobiDBLite consensus disorder prediction 475 504 - -
Rops7g00328 504 Gene3D - 306 480 IPR027417 -
Rops7g00328 504 MobiDBLite consensus disorder prediction 1 55 - -
Rops7g00328 504 Gene3D - 63 305 IPR027417 -
Rops7g00328 504 SMART helicmild6 359 440 IPR001650 -
Rops7g00328 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 100 128 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00328 Rops-Chr7 4238219 4243436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00328 87 460 Eukaryotic Initiation Factors Gene Family AT3G19760 34.933 2.80e-78 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00328 K12823 - gmx:100781619 895.575