Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00325 ATGGAGGAAAAGCCTAAGCTCATCCATGGAACTATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTCATTTCCCTTCAATTGTTTATGTGCAAATGGAAAGCCTGCTTATGTGACCATCAAGATAGACAACAAGAAGGTGGCAATAACTACACAAGAAAGTGGACGTGTATGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGCTGATTCACCTATCACTATTACACTGAAAACATCATGCTCCGTATTGGGGAGATTTCATATAGAGGCCCAGCGGTTGAAGGAAGAAAGTTTGATCAATGGGTTGTTCCCTCTCCTCATGGAAAATGGAAAACCAAACCTACAACTAAAATTAAGGTTTATATTATGGTTCAAGCCAGCATATTTGGAACCAAGTTGGGCAAAGCTATTAAGCAATGGAGAGTTCCAAGGGTTGAGGGATGCTACATTCCCACAAAGGTCTAATTGTCAGGTTAAGCTCTATCATGATGCTCACCATTCATCTTCTTTCCAACCTCCTTTTGATCTATGTGGAACTCCAAGAAATCTATGGGAGGATGTTTATAAAGCCATTGAGGGTGCAAAATATTTGATTTATATAGCAGGATGGTCCTTCAATCCCAAGATGGCTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCAAGAGAAATGAAGTTGGGTGAGCTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTTATTAAGAACAAAGGTGTGATGAACACTCACGATGAGGATGCTTTTGCTTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCAAGATTACACCATAAGTTCCCTACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAAAGCACCTGACTCTGTTAATGATAGAGAAATTATGAGCTTTTTGGGTGGTGTAGATTTGTGTGATGGACGATATGACACTGAGCAACATTCATTGTTTCAAACGCTTGCTGAGGAATCTCATTACTGTGACTTCTACCAGACAAACATTGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCATGTGTTACTGGTGAAGCTGCTTGGGATGTGTTAACCAATTTTAAACAAAGATGGACAAAGCAATGTGATCCTTCTCTTCTAGTCCCTGCTAACACCTTAGTAAATCTCATTCCAACTTGCTCAAGCAATCACATAAAGAGGAATTGGAAAGTTCAAGTATACAGGTCTATTGACTATGTTTCTGCTAGCCAGTTGTTTAGAAAGCTAACTGTGGAAAGTAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTGTGTATATTGAAAACCAATATTTCATAGGGGGGTGCCATTTGTGGCAGAATGATAGGCATAGTGGCTGCAGAAATCTGATTCCCATTGAGATTGCACTCAAGGTGGTAAGTAAGATTAAAGCAAAAAAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAATCAGTTCAAGATATACTTCATTGGACCAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATAATAGAAAGTGGAGAGCCAGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAACAGGGAAAAGAAAGGAAAAGGGGAATATCTTCCACCACATTCTCCCCATTCTGAAACACAATACTGGAATGCTCAAAAAAATAGGAGGTTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGACGACCTATATATATTAATAGGATCAGCAAATGTGAACCAAAGATCCATGGATGGGCAAAGGGACACTGAGATTGCAATAGGGGGCTACCAGTCTCAAGATGGAGCTGATCACCACATGAACCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACAGGGAGAGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGAATGTGTACAGAGAATGCGTTCAAAAGGAGATCACATGTGGGAAATCTACAACAGTGATGAGATTGTGGACATGGAAGGTGTGCACCTTGTAACTTACCCTGTGAAAGTAACCAAAGAAGGGTCTGTGGAGGACCCAGCTGATGGTGAGGTTCATTTTCCTGATACAAAGTCTCTAGTGAAGGGGAAAAGATCTAAATTATTACCCCCTATCATTACCACTTAG 2274 0.4134 MEEKPKLIHGTIEATIFNATPYSPSFPFNCLCANGKPAYVTIKIDNKKVAITTQESGRVWNQTFQIQCAHPADSPITITLKTSCSVLGRFHIEAQRLKEESLINGLFPLLMENGKPNLQLKLRFILWFKPAYLEPSWAKLLSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSSFQPPFDLCGTPRNLWEDVYKAIEGAKYLIYIAGWSFNPKMALVRDPQTEIPHAREMKLGELLKKKAEEGVAVRVMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTKAPDSVNDREIMSFLGGVDLCDGRYDTEQHSLFQTLAEESHYCDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFKQRWTKQCDPSLLVPANTLVNLIPTCSSNHIKRNWKVQVYRSIDYVSASQLFRKLTVESSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQNDRHSGCRNLIPIEIALKVVSKIKAKKRFAVYIVIPMWPEGVPESESVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKGKGEYLPPHSPHSETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGADHHMNRGDIHAYRMSLWYEHTGRAEELFLEPESLECVQRMRSKGDHMWEIYNSDEIVDMEGVHLVTYPVKVTKEGSVEDPADGEVHFPDTKSLVKGKRSKLLPPIITT* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00325 757 PIRSF PLD_plant 4 757 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops7g00325 757 Gene3D Endonuclease Chain A 417 653 - -
Rops7g00325 757 PANTHER PHOSPHOLIPASE D 8 739 IPR015679 -
Rops7g00325 757 Pfam Phospholipase D C terminal 674 746 IPR024632 -
Rops7g00325 757 SUPERFAMILY Phospholipase D/nuclease 144 406 - -
Rops7g00325 757 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 126 IPR035892 -
Rops7g00325 757 Pfam C2 domain 38 109 IPR000008 -
Rops7g00325 757 SMART pld_4 295 332 IPR001736 GO:0003824
Rops7g00325 757 SMART pld_4 602 629 IPR001736 GO:0003824
Rops7g00325 757 SUPERFAMILY Phospholipase D/nuclease 425 686 - -
Rops7g00325 757 Pfam Phospholipase D Active site motif 605 629 IPR001736 GO:0003824
Rops7g00325 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Rops7g00325 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 602 629 IPR001736 GO:0003824
Rops7g00325 757 Gene3D Endonuclease Chain A 171 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00325 Rops-Chr7 4188938 4191718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00325 30 757 Phospholipase D Gene Family (Wang group) AT1G55180 63.441 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00325 K01115 - gmx:100807431 1387.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00325 7 4188938 4191718 Rops7g00325 7 4188938 4191718 ECH
Rops7g00325 7 4188938 4191718 Rops4g02019 4 46321659 46324344 PCT