Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00323 ATGGATGCCGTTGCTGACCCTCCTCAAAACCCAACCAAAAGACACAAATGTTCGGCATGCTATAAGCAATATAAGAAGAAAGAACATCTTGTTGAGCACATGAAAACCTCATACCACTCTGTCCATCAACCTAGATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAATCTCTCAGGGAACATCTTACCGGTCCTCTGCCTAAAGGACTTTGTTCAAAGATTTTCTCTCAACAGGGTTGTCAACTTTGCTTGACACTATTCGATAGCCCCAGTTCTCTCACTGAGCATAGAGAAACATGTCGCCTATCTACCCCTGCTCCTCTAGGAACAAGTGCATTGCCCTATATAGGCTCCCCAATTGATGATCGAGATTCTTCTGATGAAAATAATGCTGACAGGCGTCCTGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGGAGTGATGGATCACTGGAACTTTGTGCTAGAGTATGCTTGGTTGATGAAGATGAGAATTTAATCTTCCACACATATGTACAGCCTCAAATCCCTGTGACTAATTATAGATATGACATAACTGGGTTGACAGAAGAGCATCTTAGAGATGCCATGCCACTTAAGGAAGTTCAAGAAAAGATATTGGAAATTTTATACAATGGAGAATCCATTGGCAAAGTTAGATTGGACGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTGGCTCATGATTTAGATTGCTTGAAAATGAATTATCCCGATCACATGCTGAGAGACACCGCAAAGTACCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTCAAGTATCTCAACCGAACATATCTAGGTTATGATATCCAAACCGGAACTCATGACCCATATGAAGATTGTATTTCTGTCATGAGACTGTACAAGAGAATACGAGGTCAAAGTCATCAGGGGGAAGGCTACGGGACATTGACTCCAAGTAACAAAATGGCTGGCATGTTTGATAGCTGGAGATCCGCAGAACTTGACAAGCTCACGCCAGATCAACTCTATGCCATGTCAAAATCAGACTATAAGTGTTGGTGTTTGGATTTGAGGCCAAGATTGGCACCCTGA 1098 0.4326 MDAVADPPQNPTKRHKCSACYKQYKKKEHLVEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGLCSKIFSQQGCQLCLTLFDSPSSLTEHRETCRLSTPAPLGTSALPYIGSPIDDRDSSDENNADRRPGAVAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVQPQIPVTNYRYDITGLTEEHLRDAMPLKEVQEKILEILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLNRTYLGYDIQTGTHDPYEDCISVMRLYKRIRGQSHQGEGYGTLTPSNKMAGMFDSWRSAELDKLTPDQLYAMSKSDYKCWCLDLRPRLAP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00323 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Rops7g00323 365 Gene3D - 135 315 IPR036397 GO:0003676
Rops7g00323 365 SMART exoiiiendus 137 311 IPR013520 -
Rops7g00323 365 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 309 IPR047021 GO:0004527
Rops7g00323 365 MobiDBLite consensus disorder prediction 114 135 - -
Rops7g00323 365 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Rops7g00323 365 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Rops7g00323 365 Gene3D Classic Zinc Finger 3 65 - -
Rops7g00323 365 SUPERFAMILY Ribonuclease H-like 139 305 IPR012337 -
Rops7g00323 365 Pfam Exonuclease 139 302 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00323 Rops-Chr7 4176162 4179064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00323 1 358 C2H2 Transcription Factor Family AT3G27970 54.190 4.20e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00323 K18327 - gmx:100805841 648.277