Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00306 ATGGGCCATATGATTCAAGCCCACAAGCGAAGGTTGAGGTCGCAGAAGAAGAAAATGGCGACAGTACCGGGACCACTCGTCTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTGAAACAGTTTGGAAGGGGCACTCAGAGCATCGAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACTCTTTCAAGTACTCTGGTTTGGCCAATAAGAAAACTGTTACTATTCAGCCTGCTGGTAAAGATCAGTCTGTGTTGCTGGCAACAACCAAGACAAAGAAACAAAACAAGCCTGCTGCTTTACTTCACAAATCTATCATGAAGAAGGAGTTTAGGAGGATGGCAAAGGCAGTGCAAAATCAGGTGGCAGATAACTACTACAGGCCTGATCTGAAGAAGGCAGCTCTTGCAAGGTTGAGTGCTGTGAATAGGAGCCTTCAAGTTGCAAAATCTGGTGTGAAGAAGAGAAACAGACAGGGCGTGAAGGTCCGTGGTAGGAAGTGA 507 0.4655 MGHMIQAHKRRLRSQKKKMATVPGPLVWEIVKKNNSFLVKQFGRGTQSIEFSREPNNLYNLNSFKYSGLANKKTVTIQPAGKDQSVLLATTKTKKQNKPAALLHKSIMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLQVAKSGVKKRNRQGVKVRGRK* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00306 168 Gene3D - 25 151 - -
Rops7g00306 168 MobiDBLite consensus disorder prediction 149 168 - -
Rops7g00306 168 FunFam 60S ribosomal protein L28 23 151 - -
Rops7g00306 168 Pfam Ribosomal L28e protein family 26 146 IPR029004 -
Rops7g00306 168 PANTHER 60S RIBOSOMAL PROTEIN L28 19 168 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00306 Rops-Chr7 3930499 3933683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00306 19 161 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.727 7.55e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00306 K02903 - gmx:100500189 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02049 4 46817091 46819634 Rops7g00306 7 3930499 3933683 ECH
Rops7g00306 7 3930499 3933683 Rops7g00306 7 3930499 3933683 ECH
Rops7g00306 7 3930499 3933683 Rops4g02049 4 46817091 46819634 PCT