Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00299 ATGGATGGTCTAAGTTGGGATGCCTCACAACTTGTTGGGAACATACCACCAACCTTGTGGAGCACTCAGCTGCAATTGTGGAGCACTCAGCTGCAAGACCTTGAAATAGACTACTCCATGCCCAACCTAAGTTCAACTGTTCTTAATTATCAAATGCAAGAGACACAGAAGGAGCAAACAAGCCATCTATATCCCATTTCTGAAAAAGTAAGCGATATGGTTCAGTCAGAAGCTGCTCCCACTTCTGAGATGATGAGTATGATGCCAAACACAAATCTGTCATCACAGAGAACAGAAGCCATGGCTGTGAAATCAGGACCCGGAACCAGTTGGGAAGAAGCTTTAACATCCCAATCATGCCGGTCCCTTTCAGTCAATATGAACCAAACTAGCAATTATGTGCCAGATTTCAACATGGTCCACCAGCAACAACTTATCAATGGCATACAAAACAGCAAGGCTACCCGCTCTCTTGAATCACTTGATTGCTTGTTTTCAGCCACAAATAGTAATACTGACACATCTGTCGAAGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTTATGGCAGTGCAGTTTCATCTGGTGAATCTGAGAGTAATGCTTCCAATGCTAGAAACAAAGACATGCAGTATCCAGTCAATGAACTGGATGAAACAGTATCTCAATGTTCCTCGGATCAATATGTCAGTCAAGGCAAAATTGTGGATTCCAAGGTTCATTGCACAAAAAGGAATCACGATCAATATGAGCTGATCAAAGTTGCTGCCAATGATCCCTACTTCAGTATTGCTCAAAATTCTTCAGCTACTGAAGGTGGTTTCAAGCTTATCTCAGAGAATGAACCAAAATCCAAGAAACCCAGATGGGATAAGCGTCCTTGTTCATCAAATATCAATTTCCAGCAGCCAAATTCATCTGTGTCACCTTCCATTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATACAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCTTGGAATTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTGAGGATATCAAATGATCCACAAACTGTGGCTGCCAGGCAAAGGAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCATTAGAAAATCTAGGTAACAAGATTGACACAATGAATCGTCCTCCTACTAGCATAGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACTCATTTCCCCATCCAAAACCCTAGCAGCCACATCCAACATTCCCAGTGTTGA 1392 0.4267 MDGLSWDASQLVGNIPPTLWSTQLQLWSTQLQDLEIDYSMPNLSSTVLNYQMQETQKEQTSHLYPISEKVSDMVQSEAAPTSEMMSMMPNTNLSSQRTEAMAVKSGPGTSWEEALTSQSCRSLSVNMNQTSNYVPDFNMVHQQQLINGIQNSKATRSLESLDCLFSATNSNTDTSVEDDGISMILSDCRNLWNFSYGSAVSSGESESNASNARNKDMQYPVNELDETVSQCSSDQYVSQGKIVDSKVHCTKRNHDQYELIKVAANDPYFSIAQNSSATEGGFKLISENEPKSKKPRWDKRPCSSNINFQQPNSSVSPSIEEPDPEAIAQMKEMIYRAAAFRPVNLGLELEVVEKPKRKNVRISNDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMNRPPTSIAFSFNPSFPMQTHFPIQNPSSHIQHSQC* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00299 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 411 IPR011598 GO:0046983
Rops7g00299 463 MobiDBLite consensus disorder prediction 302 319 - -
Rops7g00299 463 Pfam Helix-loop-helix DNA-binding domain 372 411 IPR011598 GO:0046983
Rops7g00299 463 Coils Coil 401 421 - -
Rops7g00299 463 SMART finulus 368 417 IPR011598 GO:0046983
Rops7g00299 463 MobiDBLite consensus disorder prediction 286 300 - -
Rops7g00299 463 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 169 461 IPR045843 GO:0003700|GO:0006355
Rops7g00299 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 423 IPR036638 GO:0046983
Rops7g00299 463 Gene3D - 367 430 IPR036638 GO:0046983
Rops7g00299 463 MobiDBLite consensus disorder prediction 285 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00299 Rops-Chr7 3804731 3805576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00299 113 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.747 8.71e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g00299 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00299 - - gmx:100793830 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00299 7 3804731 3805576 Rops7g00299 7 3804731 3805576 ECH
Rops7g00299 7 3804731 3805576 Rops4g02067 4 46975646 46976941 PCT