Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00294 ATGTATGGGCTTCTATTTCATGTTCGATTTCTGTTGGGTTTGAAGGAAGGTATGTTTACCAATGGTTGGACTGATTTTATTGAAGACTGTAATTTGAGTGAGTGCGACAAAATCATCCTCAAGTATCATAGTGAATCTTTCTTTAACTTTGATGAGGGAGACCAAGAATCTCTTCAAAGGACTCCTAATCGAAACAAAAAGATGAAGGTAGAGGAAGAGGATGACCAGTCTGAAGTCCACAAAGTCTTTGGTCAAATAAATTTGACTCCTTATAGTACTTCCAACAACCATCAGACATTTCCAATATCTTTCGTTCAATCATGCCTCAATTTGAAATGCAATGAAGTGCTGGTGGAGGTCGAAGACGACAGAAAATGGAGGCTGGGACTGTATACTGTGGAGTCAAGACCTAGGCAAGCTAGGTTGACATCGGGTTGGAAGAATTTTTGTCAACAATTGCAGTTGAAGCCAGGGGACATTCTAATCTTCAAGGAACAAGATAGATCCACCAACTATTTCCTCGTGCACATTGAAAGATTGTCATGA 546 0.3974 MYGLLFHVRFLLGLKEGMFTNGWTDFIEDCNLSECDKIILKYHSESFFNFDEGDQESLQRTPNRNKKMKVEEEDDQSEVHKVFGQINLTPYSTSNNHQTFPISFVQSCLNLKCNEVLVEVEDDRKWRLGLYTVESRPRQARLTSGWKNFCQQLQLKPGDILIFKEQDRSTNYFLVHIERLS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00294 181 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 14 166 IPR039218 -
Rops7g00294 181 Pfam B3 DNA binding domain 86 177 IPR003340 GO:0003677
Rops7g00294 181 SUPERFAMILY DNA-binding pseudobarrel domain 86 177 IPR015300 -
Rops7g00294 181 SMART B3_2 83 181 IPR003340 GO:0003677
Rops7g00294 181 ProSiteProfiles B3 DNA-binding domain profile. 83 181 IPR003340 GO:0003677
Rops7g00294 181 CDD B3_DNA 88 179 IPR003340 GO:0003677
Rops7g00294 181 Gene3D - 62 180 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00294 Rops-Chr7 3753822 3754450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00294 58 164 REM Transcription Factor Family AT1G26680 34.259 1.70e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops7g00294 B3 1.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00294 - K09287 psom:113272909 53.9138