Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00280 ATGATGGATGAAAGGTCAAGAAATGAGGTTTCTCCTCAGCTGTTGGATTTGATTCCAAATGAGAGAGAGTGGCATATGAATAGAGGTGAAGGAAAAGGAAAGTCTTCAGAGGAGAGGAAGCTGGAACTGAGGCTTGGTCCACCTGGTGAGGACTATTCTCTCAATGATAAAATGAAAAACACCAACACAGAAAGAGATGAGTCTCTACTCTCTCTTGGTTACTACTCTACCATGCCTCATGCAATACTGAGCTCCAACAATGGTTTCCAAAGCAAGAATATTCCTAACTCTGACACCCCAGCTGGGGCTATGTTACCCTCTCCATGGCCTTCCACAGGTTACCCTCAGGGTAATAATAAAGCTTCTTCATTTCATCAGTTTCCATCAAGTTCACTTGTGATGGGTAAGGAAGCATCACAAACCTGTTGCCCTAAGGTGATAGAGTTGCAGAATGGTGATAAGAAAGTTTTCTCTCCCTCTTCTGCAAATACAGCTGTGACCAACAGCTCTCAGAAAAGAACTGCTCCTGGCCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCACCTCTTCTAAGCCACCTCCTGAGTCTCAGCCTCAGCATGACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGGTAAAGGTTTGTTTGTCAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTTAATGCTTACGAGAGCTATGAAAATCTCTCTTCTGCTGTGGATGAGCTCTTTAGAGGTCTCCTTGCAGCTCAACGAGATTCTTCTGCTGGTGGAGTTAACAATAAGCAAGAGGAAGAGAGAACGATTACAGGTTTATTGGATGGAAGTGGGGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTAGTAAGCAAGAGAAGACATCACTTGACTCGGCAATGAAATGA 1053 0.4454 MMDERSRNEVSPQLLDLIPNEREWHMNRGEGKGKSSEERKLELRLGPPGEDYSLNDKMKNTNTERDESLLSLGYYSTMPHAILSSNNGFQSKNIPNSDTPAGAMLPSPWPSTGYPQGNNKASSFHQFPSSSLVMGKEASQTCCPKVIELQNGDKKVFSPSSANTAVTNSSQKRTAPGPVVGWPPIRSFRKNLASSSTSSKPPPESQPQHDKVAGKKPVDNYGKGLFVKINMDGVPIGRKVDLNAYESYENLSSAVDELFRGLLAAQRDSSAGGVNNKQEEERTITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKTSLDSAMK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00280 350 Gene3D - 219 339 - -
Rops7g00280 350 Pfam AUX/IAA family 41 333 IPR033389 -
Rops7g00280 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 38 331 IPR003311 GO:0005634|GO:0006355
Rops7g00280 350 ProSiteProfiles PB1 domain profile. 224 328 IPR000270 GO:0005515
Rops7g00280 350 MobiDBLite consensus disorder prediction 21 46 - -
Rops7g00280 350 FunFam Auxin-responsive protein 219 340 - -
Rops7g00280 350 MobiDBLite consensus disorder prediction 155 217 - -
Rops7g00280 350 MobiDBLite consensus disorder prediction 1 61 - -
Rops7g00280 350 MobiDBLite consensus disorder prediction 155 175 - -
Rops7g00280 350 MobiDBLite consensus disorder prediction 189 205 - -
Rops7g00280 350 SUPERFAMILY CAD & PB1 domains 220 325 - -
Rops7g00280 350 MobiDBLite consensus disorder prediction 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00280 Rops-Chr7 3615246 3619101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00280 228 339 B3 DNA Binding Superfamily AT4G23980 33.929 3.43e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops7g00280 AUX_IAA 4.7e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00280 K14484 - gmx:100799244 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02099 4 47423870 47426830 Rops7g00280 7 3615246 3619101 ECH
Rops7g00280 7 3615246 3619101 Rops7g00280 7 3615246 3619101 ECH
Rops7g00280 7 3615246 3619101 Rops4g02099 4 47423870 47426830 PCT