Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00279 ATGAATCTTCCACAGAAACCCCGTTTGAAGTTGCTACTACATTTTCATATCTTTCTGCTTCATTTTCACTGCATCAGTTCTTATCCCACACCATTGAGCTGTACGGACATAACCCGTGTTTGCACTTCTTTCTTGGCCTTTAAGCCTCAACAAAACCAGACCTTGGCAGTGATGCAAAGCATGTTTGATGTGTTGCCAAGTGACATCACTGTTGAAGGCAATGGTTGGGATTATATATTCATAAGAAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTATCTAACACCACGTTCACGGTAAAATCCAATGAAGGGCTTGTGTATGACATTGTGATGGACGCCTATGATGGGCTTGCGTTCTTGCCCAACACGACTCGTTGGGCAAGAAAAGGTGCTGTGATACCACTGAGCTTGTTCTGTAGTTGCTCCAGTGGACTGTGGAACTATTTGATGAGTTATGTCATCAGAGATGGGGATAGCATTGAATCATTGGCAAGCAGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTAAATGGCATTGGCAATCCTGATAGCATCATTGTTGGTTCTCTGTATTATATACCTCTTAATTCAGTTCCTGGTGAGCCTTATCACCTGAAGAATGATACTCTTCCAGTTCCTGTCCCTTCCCCATCTGTTGATGATTTTTCAGCTGATCAAATCAACCGTGAGGCTCATGTACCCTATGGATGGGTCTTCGGAGGTTCAGGGGTTGGTCTTGCACTAATAATATTAAGCATGATTCTGTGTGTATCCCTGAGATCATCATATTGTTATGTTGAAGCCAGAAATCATGCAAAAGATGCTGAGGGCAAGATCTCTCAGAAGTTCCATATTCTTGGGAGTCCATGTTTGTTTTGTGGTTCTGGAAGATACATATGTGGCAAACCAATAAACCAGAAGCAAACTGATGGTGACTCCAGCAGTCACCAAATTACTGTTCCAAAAGCTTCAACTCTAATGCCTGACATTTTTGACATGGATAAGCCGGTAGTTTTTGCATATGAAGAGATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTGCTTGAGTACAGAACATATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCCATTAAAAGAATAACAGCTACAAAAACTAAAGAGTTTATGTCAGAGATGAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTACAATTGATTGGCTATGCGGCTAGTCATGAAGAGCTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGTAGCCATTTGCATGATCCTCAAAATAAGGGCCATTCATCACTTTCTTGGATCACAAGGGTCCAGATTGCGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCGTTACGTTCATCAAGATATCAAGACAAGCAACATTTTACTTGATGATTCCTTCAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTATTGGTAAAACAAATGAGGAAGAAACCGCAACAACCAAAATTGTTAGTACATATGGATATCTTGCTCCAGAATACTTGAGCAATGGCCTTGTGACGACCAGAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTCGAGATTATATCAGGAAAGAAGGCCATTATTCAAACACAAGGTCCTGAAAGACGATCACTGGCATCTATAATGTTGGCAGTTCTTAGGAACGTACCTGATTCCATGAGCATGTCAAGCATGAGAGACCACATTGATCCTGTTATGATGGATTTGTATCCCCGTGATTGTGTATTTAAGATGGCCATGCTGGCAAAGCAATGTGTGGATGATGATCCCATTCTACGTCCTGATATGAAGCAAGTTGTGCTTTCCCTCTCACAGATTCTCCTGTCTTCTATTGAGTGGGAGGCGACTCTAGCGGGGAACAGCCAAGTATTTAGTGGGCTTATTCAAGGAAGGTGA 1983 0.4145 MNLPQKPRLKLLLHFHIFLLHFHCISSYPTPLSCTDITRVCTSFLAFKPQQNQTLAVMQSMFDVLPSDITVEGNGWDYIFIRKNCSCAAGMKKYVSNTTFTVKSNEGLVYDIVMDAYDGLAFLPNTTRWARKGAVIPLSLFCSCSSGLWNYLMSYVIRDGDSIESLASRFGVSMDSIETVNGIGNPDSIIVGSLYYIPLNSVPGEPYHLKNDTLPVPVPSPSVDDFSADQINREAHVPYGWVFGGSGVGLALIILSMILCVSLRSSYCYVEARNHAKDAEGKISQKFHILGSPCLFCGSGRYICGKPINQKQTDGDSSSHQITVPKASTLMPDIFDMDKPVVFAYEEIFSSTDGFSDSNLLEYRTYGSVYYGLLRDQEVAIKRITATKTKEFMSEMKVLCKVHHANLVQLIGYAASHEELFLIYEYAQKGSLSSHLHDPQNKGHSSLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDDSFRAKISDFGLAKLIGKTNEEETATTKIVSTYGYLAPEYLSNGLVTTRSDVYAFGVVLFEIISGKKAIIQTQGPERRSLASIMLAVLRNVPDSMSMSSMRDHIDPVMMDLYPRDCVFKMAMLAKQCVDDDPILRPDMKQVVLSLSQILLSSIEWEATLAGNSQVFSGLIQGR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00279 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Rops7g00279 660 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 39 654 IPR044812 GO:0019199|GO:0045087
Rops7g00279 660 ProSiteProfiles Protein kinase domain profile. 355 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00279 660 Pfam Protein tyrosine and serine/threonine kinase 365 631 IPR001245 GO:0004672|GO:0006468
Rops7g00279 660 Pfam LysM domain 155 192 IPR018392 -
Rops7g00279 660 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Rops7g00279 660 SMART LysM_2 154 198 IPR018392 -
Rops7g00279 660 SMART serkin_6 355 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00279 660 Gene3D Transferase(Phosphotransferase) domain 1 428 646 - -
Rops7g00279 660 FunFam PTI1-like tyrosine-protein kinase 3 427 646 - -
Rops7g00279 660 SUPERFAMILY LysM domain 153 198 IPR036779 -
Rops7g00279 660 Gene3D Phosphorylase Kinase; domain 1 330 426 - -
Rops7g00279 660 Gene3D LysM domain 150 204 IPR036779 -
Rops7g00279 660 SUPERFAMILY Protein kinase-like (PK-like) 332 632 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00279 Rops-Chr7 3580805 3586012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00279 13 660 Receptor kinase-like Gene Family AT1G51940 62.784 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops7g00279 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00279 - - gmx:100789067 1061.21