Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00272 ATGATCTCCTCAACCAGATGCACCTTCCTGAGCAACTCAGGGTTATGTGGGTCTAGCAGCTTCTCTGGTGCGCAGAGAAGGCGTTCGGGTCCTATGAGGGTGGTGTGTATGGCTCCGAGCAGCGGTGACAGAAACGGCAGCGTTGTGATGGAGACACCGTTGAAAGAAATGAGAAACGAATCCACGGTGGCCGATGTGGACGATAACCCTATCTCTTCCGGCGGTCCTCAGGATGTGTACGGTGAGGATAAGGCCACGGAGGATCACTTTGTTACTCCATGGAGTGTCTCTGTTGCTAGTGGTTATACATTGTTGAGAGATCCCCACTTCAATAAAGGGCTGGCCTTTACTGAAAAGGAGAGGGATGCCCACTACTTGCGTGGCCTTCTTCCCCCAACAGTTATTCCTCAAGAAACTCAGGTGAAGAAAATGATCCAGCACATACGCCAGTATCAAGTTCCATTGCAGAAATACATGGCAATGATGGATCTTCAGGAGAGAAATGAACGGCTGTTTTACAAACTTCTTATTGATCACGTTGAAGAGTTACTCCCCGTTGTCTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGAAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGCAAGATTCTCGAAGTATTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAAAGGATCCTGGGTCTTGGGGATCTTGGTTGTCAGGGGATGGGAATACCGGTGGGAAAACTTTCTTTATATACAGCACTTGGCGGAGTTCGTCCTTCAGCTTGCTTGCCTATTACCATTGATGTGGGAACAAACAATGAGAAGCTGCTGAATGATGAATTATATATTGGGCTAAAACAAAGACGAGCAACTGGACAGGAATATGCTGAACTTATGCATGAATTTATGAGTGCAGTCAAGCAAACTTATGGTGAAAAAGTCCTGATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGATCGACCCACCTGGTTTTTAACGATGATATTCAGGGAACAGCATCAGTAGTCCTTGCTGGACTAGTTGCAGCTTTGAAATTGGTTGGGGGAAACTTAGCTGACCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCCCCACTGGAGGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGTTCCCGCAAAGAATCACTCCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTGTTAAAAACCTTGTAGATGCTGTTAATCAAATTAAGCCAACAGTGCTGATTGGAACATCAGGACAAGGAAGAGCTTTTAATAAAGAGGTGGTTGAGGCTATGGCCTCTATTAATGAGAGACCTATTATTCTTGCTCTTTCCAACCCAACGTCACAGTCAGAATGTACCGCAGAAGAAGCTTATAGGTGGAGCCAGGGACGTGCCATTTTTGCAAGTGGGAGTCCATTTCCCCCGGTGGAATATGAGGGGAAAGTGTTTATGCCTGGCCAGGCCAACAATGCATACGTATTTCCTGGATTCGGTCTTGGTTTAATAATGTCTGGGACCATTCGTGTGCATGACGACCTGCTTCTGGCTGCCTCTGAGGCATTGGCAGCACAAGTGAGCCAGGAGAACTTTGACAAAGGACTCATATACCCACCATTCACTAACATCAGAAAGATTTCAGCACACATAGCTGCCAATGTTGCTGCTAAGGCTTACGAGCTTGGCTTGGCCACTCGTCTGCCTCAACCCAAAGATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACCCCTGCCTACAGAAGCTACCGATGA 1923 0.4566 MISSTRCTFLSNSGLCGSSSFSGAQRRRSGPMRVVCMAPSSGDRNGSVVMETPLKEMRNESTVADVDDNPISSGGPQDVYGEDKATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVIPQETQVKKMIQHIRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMSAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKNLVDAVNQIKPTVLIGTSGQGRAFNKEVVEAMASINERPIILALSNPTSQSECTAEEAYRWSQGRAIFASGSPFPPVEYEGKVFMPGQANNAYVFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVSQENFDKGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRSYR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00272 640 SMART Malic_M_2 356 609 IPR012302 GO:0051287
Rops7g00272 640 SMART malic_2 165 346 IPR012301 GO:0004471
Rops7g00272 640 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 81 355 IPR046346 -
Rops7g00272 640 FunFam Malic enzyme 354 640 - -
Rops7g00272 640 PRINTS Malic enzyme signature 352 368 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 PRINTS Malic enzyme signature 267 289 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 PRINTS Malic enzyme signature 383 399 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 PRINTS Malic enzyme signature 171 195 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 PRINTS Malic enzyme signature 231 260 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 PRINTS Malic enzyme signature 327 345 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 PRINTS Malic enzyme signature 486 502 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 ProSitePatterns Malic enzymes signature. 352 368 IPR015884 GO:0004471
Rops7g00272 640 FunFam Malic enzyme 99 353 - -
Rops7g00272 640 Gene3D - 354 640 - -
Rops7g00272 640 Pfam Malic enzyme, NAD binding domain 356 608 IPR012302 GO:0051287
Rops7g00272 640 Gene3D - 99 353 IPR037062 GO:0004471
Rops7g00272 640 Pfam Malic enzyme, N-terminal domain 165 346 IPR012301 GO:0004471
Rops7g00272 640 CDD NAD_bind_1_malic_enz 356 634 - -
Rops7g00272 640 PANTHER MALIC ENZYME-RELATED 74 640 - -
Rops7g00272 640 PIRSF ME 58 640 IPR001891 GO:0004470|GO:0004471
Rops7g00272 640 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 356 639 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00272 Rops-Chr7 3508918 3514630 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00272 K00029 - gmx:100791514 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02108 4 47511521 47516886 Rops7g00272 7 3508918 3514630 ECH
Rops2g00326 2 4901488 4906262 Rops7g00272 7 3508918 3514630 ECH
Rops10g01603 10 29586920 29592143 Rops7g00272 7 3508918 3514630 ECH
Rops7g00272 7 3508918 3514630 Rops7g00272 7 3508918 3514630 ECH
Rops7g00272 7 3508918 3514630 Rops10g01603 10 29586920 29592143 ECH
Rops7g00272 7 3508918 3514630 Rops4g02108 4 47511521 47516886 PCT