Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00262 ATGGCAATGTCCTGCAAGGATGGTAGCAAAATCGCATTGGATAACGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTACCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAACAGCTCATTAGGGAGTGTCCTATTCTCTCTCACATCGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACAGGAGATGTAGAGAGAAGCAGAGGAAAGAGGCTTCACGGCTGCAAGCTGTGAATAGGAAGCTTACAGCCATGAATAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTGTATGAAAATGGCTACTTTCGTCAACATACCCAAAATACTACGCTTGCAACCAAAGACACAAGCTGTGAATCAGCCGTTACTAGTGGTCAACGCAGTTTGACTACCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTAGCACTGGTGTGGCCGCAAGAGCATGCGGCCTAGTGGGCCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATCGGCCATCCTGGTTTCGTGATTGCCGAGCAGTTGATGTTCTTAATGTGCTTCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTACATGCAGCTATATGCACCAACCACATTGGCACCTGCGCGGGACTTCTGGTTGTTGCGCTATACATCTGTTTTAGAAGATGGAAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCCAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTTCCTGAAGTTCTGCGTCCACTGTATGAATCATCAACAGTGCTGGCTCAAAAGACAACAATGGTGGCTCTGCGTCATCTAAGGCAGATTTCACATGAAGTTTCCCAGTCTAATGTCACTGGGTGGGGCAGACGACCGGCAGCTCTTCGAGCACTTGGCCTGAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGATGATGTTACAATTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCCAAAGCTTCAATGCTATTACAGAATGTGCCTCCAGCCATTTTACTAAGGTTCCTAAGGGAGCATAGATCGGAATGGGCTGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGTTTATCAGGATCTCGGGTTGGAAATTATGCGGGTCAAGTTATTCTTCCTCTAGCCCACACTATTGAGCATGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCTGAAGACACAATAATACCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCGCCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTCCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAAGCAACCAACCCAAATCGCACCCTTGACCTTGCATCTGCCCTTGACATTGGCCCCACTGGAAACAGAGCATCGAATGATTATTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCACATGCAAGAGCATGTAGCTTCCATGGCACGACAATATGTTCGCAGCATTATATCGTCTGTCCAAAGGGTAGCATTAGCGCTTTCACCTTCTCATTTAAGTTCACAAGCTGGGCTTAGGACGCCACTTGGTACCCCTGAAGCACAAACACTTGCTCGTTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTTGAACTACTTAAATCTAATAATGAGGGCAATGAATCTTTACTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCGGTGTTCACTTTCGCAAACCAGGCAGGGCTTGATATGCTGGAGACTACCTTAGTTGCTCTACAAGATATAACGTTAGAGAAAATATTTGATGATCACGGCCGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGCGGCCTATCTCATATGAAAGAGTAGTGGCGTGGAAGGTGCTGAATGAGGAAGAGAATGCTCATTGTATTTGTTTTATGTTTATGAACTGGTCTTTTGTTTGA 2517 0.4593 MAMSCKDGSKIALDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESAVTSGQRSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGLRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYAGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIIPREVFLLQLCSGMDENAVGACAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEATNPNRTLDLASALDIGPTGNRASNDYSGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00262 838 Gene3D - 195 373 IPR023393 -
Rops7g00262 838 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
Rops7g00262 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Rops7g00262 838 SUPERFAMILY Bet v1-like 160 370 - -
Rops7g00262 838 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Rops7g00262 838 ProSiteProfiles START domain profile. 151 352 IPR002913 GO:0008289
Rops7g00262 838 SUPERFAMILY Homeodomain-like 15 80 IPR009057 -
Rops7g00262 838 SMART START_1 160 370 IPR002913 GO:0008289
Rops7g00262 838 Gene3D - 10 83 - -
Rops7g00262 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 838 IPR044830 GO:0003700
Rops7g00262 838 CDD homeodomain 17 77 IPR001356 GO:0003677
Rops7g00262 838 Pfam MEKHLA domain 695 837 IPR013978 -
Rops7g00262 838 SMART HOX_1 14 80 IPR001356 GO:0003677
Rops7g00262 838 CDD bZIP 69 108 - -
Rops7g00262 838 Pfam START domain 161 369 IPR002913 GO:0008289
Rops7g00262 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Rops7g00262 838 CDD START_ArGLABRA2_like 155 370 - -
Rops7g00262 838 Coils Coil 72 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00262 Rops-Chr7 3417580 3425036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00262 1 790 Homeobox Transcription Factor Family AT1G52150 86.111 0.0 1420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops7g00262 START 5.8e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00262 K09338 - zju:107428556 1572.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00262 7 3417580 3425036 Rops7g00262 7 3417580 3425036 ECH
Rops7g00262 7 3417580 3425036 Rops4g02119 4 47653646 47662943 PCT