Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00255 ATGAAAGAAACAAGCTGTTATGAAACTGGTAGCAGTAGCAGTAGCAACAGCAACTCTTTTGCAGCTGCATCAAATTCAATTTTTTCAGAACCCCAAAAAACAGAGACTGAAAAACAGAGGAGGCCCAAGAGAAGCAGAGAGTGCAGCAAGCACCCGGTTTTCCATGGGGTCCGAATGCGTAATTGGGGCAAATGGGTGTCTGAAATTCGTGAGCCCCTCAAGAAATCACGTATCTGGCTTGGAACTTTTGCAACCCCTGAAATGGCAGCTAGAGCCCACGATGTTGCAGCTTTAAGCATAAAGGGCCACTCAGCTATTCTCAATTTCCCAAAGATAGCTCACGTGCTACCAAGACCCCTCACTTTGACCCCACGTGACATCCAAACCGCGGCTGCAGAAGCCGCGACCATGGTGGAATTTGACACGTTACAGTCACCATCTTCATCAGAAGAAGAAGGGACAGAGTCCTCAGAGCTGAGTGAGATTGTTGAATTGCCTAACATAGAAGCGAGCTTTGACTCGGTGGACTCGAGAACCGAGTTAATATCAAGTGACTCGGGGGATGGTTGGGTGTACCCGTCAATGGCTAGTTTTTCTGACATGATGCTTGGAGATATAGAGAGTTCTGATGAGTGTTCGATTCCAATTTGGGACAAATGGGTGTGA 666 0.473 MKETSCYETGSSSSSNSNSFAAASNSIFSEPQKTETEKQRRPKRSRECSKHPVFHGVRMRNWGKWVSEIREPLKKSRIWLGTFATPEMAARAHDVAALSIKGHSAILNFPKIAHVLPRPLTLTPRDIQTAAAEAATMVEFDTLQSPSSSEEEGTESSELSEIVELPNIEASFDSVDSRTELISSDSGDGWVYPSMASFSDMMLGDIESSDECSIPIWDKWV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00255 221 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Rops7g00255 221 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Rops7g00255 221 MobiDBLite consensus disorder prediction 33 49 - -
Rops7g00255 221 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Rops7g00255 221 MobiDBLite consensus disorder prediction 1 49 - -
Rops7g00255 221 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Rops7g00255 221 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Rops7g00255 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 172 - -
Rops7g00255 221 MobiDBLite consensus disorder prediction 1 32 - -
Rops7g00255 221 Pfam AP2 domain 52 103 IPR001471 GO:0003700|GO:0006355
Rops7g00255 221 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Rops7g00255 221 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Rops7g00255 221 CDD AP2 54 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00255 Rops-Chr7 3364267 3365218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00255 37 193 AP2-EREBP Transcription Factor Family AT5G11590 55.682 7.63e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops7g00255 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00255 K09286 - gmx:100784419 241.121