Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00244 ATGTCTAGACCATTAGAACATGATTACATAGGATTGGCAGAGAATCCGTCAATGAACGGAAGCTCTGACAAAGTCTCTTCTTCTGTTGCCTCCACCCTCTCTTCTGAGGATGGTAAGACTTCATCTCTTAACTTCAAGGAGACAGAACTGAGGCTTGGCCTACCTGGTTGTGAGTCTCCTGAGAGAAAATCAGGTTCTGGGGTCTCTCTTTTTGGGAAGGATTTGCAGAACAAGCATAATGTTTGTTCTCTTGCAAGCCCTTTGAAGAACCTTGTGGCTGGGGTTGGAGCTAAGAGGGGCTTCTCTGATGCTATTGATGACTCTTCTGGGAAATGGGTTTTCTCTGTCACTGATGGATCTGAAGTTGAGTTGGGAAAAGGAGCTGCTTTGTTCTCTCCTAGAGGAGGGAATGTTGGGAAGCCTCTTGTTGGTTTAGAGACTCAAACTAGCACCCAGCAGGCTAATACTACTGCACCAACCATCAAAGAGGTTGCTATAGTTCCCCAATCTGCAAAGCCAGTGAAGGAAAAGAATACTCAGGTTGCTGGAACAAATGAGCATGCTAGTGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTCCGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAGGGAAAACCAGGGTTTGGTTGTCTCTATGTAAAAGTAAGTATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTACAACAACTATATGGAACTTTCTTCTGCTCTCGAGAAGATGTTCAGCTGCTTTTCCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGAGATCTTCTCCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTGGGCGATGTTCCATGGGAGATGTTCACTGACTCATGTAGGCGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTAG 1053 0.4511 MSRPLEHDYIGLAENPSMNGSSDKVSSSVASTLSSEDGKTSSLNFKETELRLGLPGCESPERKSGSGVSLFGKDLQNKHNVCSLASPLKNLVAGVGAKRGFSDAIDDSSGKWVFSVTDGSEVELGKGAALFSPRGGNVGKPLVGLETQTSTQQANTTAPTIKEVAIVPQSAKPVKEKNTQVAGTNEHASAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFSIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00244 350 FunFam Auxin-responsive protein 225 342 - -
Rops7g00244 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 43 337 IPR003311 GO:0005634|GO:0006355
Rops7g00244 350 Gene3D - 227 343 - -
Rops7g00244 350 Pfam AUX/IAA family 47 341 IPR033389 -
Rops7g00244 350 SUPERFAMILY CAD & PB1 domains 230 331 - -
Rops7g00244 350 MobiDBLite consensus disorder prediction 1 44 - -
Rops7g00244 350 MobiDBLite consensus disorder prediction 15 44 - -
Rops7g00244 350 ProSiteProfiles PB1 domain profile. 230 332 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00244 Rops-Chr7 3288388 3291176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00244 232 344 B3 DNA Binding Superfamily AT1G19850 32.174 5.31e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops7g00244 AUX_IAA 4.5e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00244 K14484 - gmx:100804423 525.398