LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops7g00242	ATGATGGCTGGGAACCCTAACTGGTGGAACATGCATCCACCATCTTTGATGCCTCCCCAATATGTGCTTGGATCTTCTTCAATGCCTTTTAATTCTTTGACAGAAAATCCAGAACCTCCTCAATCATGGAGCCAACTGCTTTTTACTGGATTACCGGGGGAAGAAGAGAGATTAGGTTTCAGTCATTTTCAACCTAAAAACACAGAAAACTGGGATGTCCAAATTCTCAATCCATCTTCCAGAGTTCCTATTCTGGATGTAATAAAACAGGAAGCTTCTCAAAGTGGCAATTTGTACGGCCATGGGCGTGAGGAATTTCAGGCTTGTGGACCAGTCTCATCTTGGTCACAAATGGTGCCAGTTTCTTCCCCAAGGTCTTGTGACACTAGCTTGAGTAGTAATCACATATTGGATTTCACTTATAACAAGGCAGATCATAGGAAAAATCAACTACCAGATCAAACATCTGAGTGTAATAGTACAGCCACTGTTGGAGTTTGTAAGAAGGCTAGGGTTCAACCATCTTCAAGCCAAGCACCTCTGAAGGTGCGGAAGGAGAAGCTAGGTGATAGAATAGCAGCCCTTCACCAATTAGTTTCGCCATTTGGAAAGACTGACACGGCTTCTGTCTTGTTAGAAGCCATTGGATATATCAGGTTCCTGCAGGGTCAAATTGAGGCACTCAGCTCTCCTTACTTGGACAATGCATCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTAAAAAGAAAGGGAGCTCCAAACCAGGAAGCAGAAGATAAGCCGAAGGACTTAAGGAGTAGAGGGTTGTGTCTGGTCCCTGTGTCTTGCACCCAACATGTTGGAAACGAAAATGGGGCCGATTACTGGGCACCCGCATATGGCAGTGGATTTTAA	954	0.4434	MMAGNPNWWNMHPPSLMPPQYVLGSSSMPFNSLTENPEPPQSWSQLLFTGLPGEEERLGFSHFQPKNTENWDVQILNPSSRVPILDVIKQEASQSGNLYGHGREEFQACGPVSSWSQMVPVSSPRSCDTSLSSNHILDFTYNKADHRKNQLPDQTSECNSTATVGVCKKARVQPSSSQAPLKVRKEKLGDRIAALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDNASKNMRNQQSVHGERNSVFPEDPGQLLNDNGLKRKGAPNQEAEDKPKDLRSRGLCLVPVSCTQHVGNENGADYWAPAYGSGF*	318

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops7g00242	317	Gene3D	-	182	247	IPR036638	GO:0046983
	Rops7g00242	317	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	48	299	-	-
	Rops7g00242	317	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	182	233	IPR036638	GO:0046983
	Rops7g00242	317	FunFam	Transcription factor bHLH123 family	182	245	-	-
	Rops7g00242	317	CDD	bHLH_AtbHLH_like	182	229	IPR045239	-
	Rops7g00242	317	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	172	221	IPR011598	GO:0046983
	Rops7g00242	317	MobiDBLite	consensus disorder prediction	240	284	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops7g00242	Rops-Chr7	3235117	3238164	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops7g00242	1	261	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G29100	40.303	2.48e-46	158

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops7g00242	-		-	gmx:100802121	527.324

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