Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00234 ATGGGTGCAGACATGTCCAACAACAATCCACCCCCCACTCCTCATGCTAAAGACTTCTTTGCTTCCCCAGCTCTCTCTCTTAGCCTTGCTGGGATTTTTCGCCATGCTGGGGCGGCGGCGGCTACTTCGAACATGGAGGTGGAAGAGGGTGAGGAAGGAAGTGGAGGAGGTGAGCGACTAGAAGACATTAGCAGTGAGAACTCAGGTCCCACGAGATCTAGATCAGAAGATGATTTTGAAGGAGAAGGTGAACATGATGAAGATGATGGTGATGGAAATAAGAACAACAACAAGAACAAGAAGAGGAAGAAATATCACAGGCACACAGCTGAGCAAATCAGAGAAATGGAAACCCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAGAATTCTCTGTTGAAGACAGAAATAGAGAATCTAAAGGAGAAAAATAAGACCTTGAGAGAGACCATAAACAAAGCTTGTTGCCCCAACTGTGGCGTGCCCAGCACAAGCAGAGATGGTGGCATGCCAACTGAAGAACAACAATTACGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAGCAGCTTTAGGGAAATATGCACCAGGGACAACTTCCCCTTCATGTTCTTCTAGCCAGGATCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGATAAGTCAAGGATAATGGATATAGTAAACCAAGCAACGGAGGAGCTCATAAAGATGGCTACCAAGGGGGAACCGTTATGGCTTCGTAGCTTTGAAACTGGTCGCCAAATACTTAACTATGATGAATACATGAAGGAGTTCTCAGTTGAAAATTCAAACAGTGGAAGGCCAAAGAGATCCATTGAAGCCTCAAGAGAGACAGGGGTTGTTTTCGTAGATCTCCCTCGGCTTCTCCAAAGTTTTCTAGATGCTAATCAATGGAAGGAAATGTTTCCATGTTTGATATCTAAGGCAGCAACTGTTGACATCATATGCAATGGAGAAGGTTCTAACAGGAATGGTGCAGCGCAACTGATGTTTGCTGAGCTGCAAATGCTCACACCAATGGTGCCCACCAGAGAAGTCTATTTTGTCCGATACTGCAAACAGTTGAGTGCTGAACAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGTAGAAAACGCCCATCCGGTTGCATTATTGAGGACAAGTCAAATGGCCATTGCAAAGTAATCTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAGTCCATTCAATGTATCGCACCATTGTCAACAGTGGCCTAGCCTTTGGGGCAAGGCATTGGATTGCGACACTGCAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACAAATGTCCCCATGAAGGATTCAACCGGTGTTGCGACATTGGCGGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGTGCATCAAGCTTCCATACATGGACTAAGGTTACTAGTAAAACCGGGGAAGACATAAGGATTAGTTCTAGGAAGAACTTGAACGATCCCGGTGAACCTCTTGGGTTGATACTGTGCGCAGTTTCTTCTGTATGGTTGCCTGTCTCTCCTAATGTTCTATTTGATTTCTTGAGAGATGAAGCTTGCAGAACAGAGTGGGATATCATGTCTAGTGGTGCATCAGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACCGAGGCAATGCGGTAACCATCCAAACAATTAAATCAAAAGAAAACAGTATGTGGATATTGCAAGATAGCTGCACAAATCCTTTTGAGTCAATGGTGGTATATGCTCCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAATCTTGCCATACTGCCCTCAGGATTCTCAATTGTTCCTGATGGCCTTGAGTCAAGGCCATTGGTGATTACCACAAGGCAGGAAGAGAAGAATACAGAAGGAGGGTCTTTGTTTACAATAGCATTCCAGATCCTTACCAATGCTTCTCCTACAGCCAAGTTAACAATGGAGTCTGTGGACTCGGTCAACACTCTTGTATCTTGTACATTGAAAAATATCAGAACAAGTTTACAATGCGAAGATGGTTAG 2268 0.4418 MGADMSNNNPPPTPHAKDFFASPALSLSLAGIFRHAGAAAATSNMEVEEGEEGSGGGERLEDISSENSGPTRSRSEDDFEGEGEHDEDDGDGNKNNNKNKKRKKYHRHTAEQIREMETLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIENLKEKNKTLRETINKACCPNCGVPSTSRDGGMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGTTSPSCSSSQDQENRSSLDFYTGIFGLDKSRIMDIVNQATEELIKMATKGEPLWLRSFETGRQILNYDEYMKEFSVENSNSGRPKRSIEASRETGVVFVDLPRLLQSFLDANQWKEMFPCLISKAATVDIICNGEGSNRNGAAQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDEACRTEWDIMSSGASVQSIANLAKGQDRGNAVTIQTIKSKENSMWILQDSCTNPFESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIVPDGLESRPLVITTRQEEKNTEGGSLFTIAFQILTNASPTAKLTMESVDSVNTLVSCTLKNIRTSLQCEDG* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00234 755 MobiDBLite consensus disorder prediction 38 109 - -
Rops7g00234 755 Gene3D - 88 171 - -
Rops7g00234 755 SUPERFAMILY Bet v1-like 524 741 - -
Rops7g00234 755 Coils Coil 158 188 - -
Rops7g00234 755 Gene3D - 316 489 IPR023393 -
Rops7g00234 755 Pfam START domain 272 494 IPR002913 GO:0008289
Rops7g00234 755 SMART START_1 270 494 IPR002913 GO:0008289
Rops7g00234 755 CDD homeodomain 106 157 IPR001356 GO:0003677
Rops7g00234 755 FunFam Homeobox-leucine zipper protein GLABRA 2 270 493 - -
Rops7g00234 755 CDD START_ArGLABRA2_like 265 493 - -
Rops7g00234 755 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Rops7g00234 755 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Rops7g00234 755 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 100 750 IPR042160 -
Rops7g00234 755 SUPERFAMILY Homeodomain-like 91 160 IPR009057 -
Rops7g00234 755 FunFam Homeobox-leucine zipper protein HDG1 87 175 - -
Rops7g00234 755 Pfam Homeodomain 102 157 IPR001356 GO:0003677
Rops7g00234 755 ProSiteProfiles START domain profile. 261 497 IPR002913 GO:0008289
Rops7g00234 755 SMART HOX_1 101 163 IPR001356 GO:0003677
Rops7g00234 755 SUPERFAMILY Bet v1-like 263 494 - -
Rops7g00234 755 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00234 Rops-Chr7 3160264 3166329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00234 63 754 Homeobox Transcription Factor Family AT1G79840 67.141 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops7g00234 START 6.6e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00234 K09338 - gmx:100809926 1308.51