Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00178 ATGGATGTTACTTCTCTGGGTTCAAATAGCAACACCCAAACCGACCAACATCCTTTGCTGATGGAGCAGCCAGAAACCCGTGATGGCCATCAGCACATAATTGACATTACAAGGAATGATGAAGCTTTATCCACATCATCTCATAATGATCAACACTCTGAAATGCATTTACCACAGAATCAAGATCAACCAGCTGGGGGCACGCAAGATTCCACTCATCAAACACCTTCATCTTCTGCATCCAGATTAAACTCTAGAAATTCCTCTACGTTGAGAAGAGGTGAGGGGTATGGGCATCGCAGGAGGAGTCCCTTGAATTCTGGACTATGGATTTCTGTCGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATTGTGGTTTTGTCATTGTCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCATGGATTGTGGGTTATGCATCTGGATGTGTTGCCACACTTCCTATTCTTTACTGGCGTTTTCGAAACCGCAATCAAAGCACTGAACAACATACCTCTCAACCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGAAAGTACATATACTGCCATCTATGTTTCTCATGTCTCAGATGAGGAGAATGGCCATGCTGCTCAAGAAGCAGCAAGAAACACTCTAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGTTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGACGCTCCACAATTATATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCTATGCCATTTATTCTGTGTGCAACTATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCTATTAATGCTCTTCCAATCTACAAGTTCAAATTGAAGAACAATGAAAATGGTGATGATCAATCTATCAATGCAGCCATAGATGAAGGTGGGATTTTGGCTGCAGGGACAGAAAAGGAGCGGGTGATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGACTAAATATGCAGATGCTGATGAGCTTAGGGAGTTACCTTGCTCTCACGTCTTTCATGTAGGATGTGTTGACAAATGGTTAAAGATAAATGCATCCTGCCCTCTTTGTAAAAATGAAGTTGGCACAAGTAGTGGAGGTTCACCTTCATCATGGGAATGA 1266 0.4194 MDVTSLGSNSNTQTDQHPLLMEQPETRDGHQHIIDITRNDEALSTSSHNDQHSEMHLPQNQDQPAGGTQDSTHQTPSSSASRLNSRNSSTLRRGEGYGHRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSTEQHTSQPSQGSSGSNPPESTYTAIYVSHVSDEENGHAAQEAARNTLIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIYKFKLKNNENGDDQSINAAIDEGGILAAGTEKERVISGEDAVCCICLTKYADADELRELPCSHVFHVGCVDKWLKINASCPLCKNEVGTSSGGSPSSWE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00178 421 SMART ring_2 365 405 IPR001841 -
Rops7g00178 421 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
Rops7g00178 421 FunFam E3 ubiquitin-protein ligase 348 415 - -
Rops7g00178 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Rops7g00178 421 Pfam Ring finger domain 365 406 IPR001841 -
Rops7g00178 421 SMART ringv_2 364 406 IPR011016 GO:0008270
Rops7g00178 421 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Rops7g00178 421 SUPERFAMILY RING/U-box 357 412 - -
Rops7g00178 421 CDD RING-H2_RNF6-like 365 406 - -
Rops7g00178 421 MobiDBLite consensus disorder prediction 43 92 - -
Rops7g00178 421 MobiDBLite consensus disorder prediction 43 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00178 Rops-Chr7 2582684 2586340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00178 1 416 C3H Transcription Factor Family AT1G80400 59.048 1.97e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00178 - - gmx:100819516 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00178 7 2582684 2586340 Rops7g00178 7 2582684 2586340 ECH