Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00177 ATGGAGAAAGAAGGTCTTGGACTTGAAATCACAGAGCTAAGGTTGGGTCTTCCCGGTGGGGAACCTCCATGTGTAGTGGAGAAGAATGAGAAGAAGAGGGTGTTCTCCGAGATTGATGGTGATGGAGATGAAAATAGCTCCTCCGATGACAAGGAAATGCAGACAAAGAATCAAGTTGTAGGGTGGCCTCCGGTGTGTTCGTATAGGAAGAAGAACAGTGTGAATGAATCCTCAAAAATGTACGTTAAAGTTAGCATGGATGGGGCTCCGTTCTTGCGTAAAATTGATTTGGGCATGCATAAGGGATACTCAGAGTTAGCCTTCGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATCGATGCGGAGAATTCTGAACACGTTCCGATCTACGAGGACAAAGACGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATCGAGTCATGCAAGAGGTTGAGGATTATGAAGAAATCAGATGCAAAGGGCTTTGATCTGCAACCGAAAGGGTCTTTAAAGGATTTATAG 534 0.4551 MEKEGLGLEITELRLGLPGGEPPCVVEKNEKKRVFSEIDGDGDENSSSDDKEMQTKNQVVGWPPVCSYRKKNSVNESSKMYVKVSMDGAPFLRKIDLGMHKGYSELAFALEKLFGCYGIDAENSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKKSDAKGFDLQPKGSLKDL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00177 177 Gene3D - 73 171 - -
Rops7g00177 177 SUPERFAMILY CAD & PB1 domains 72 159 - -
Rops7g00177 177 MobiDBLite consensus disorder prediction 35 56 - -
Rops7g00177 177 Pfam AUX/IAA family 123 166 IPR033389 -
Rops7g00177 177 Pfam AUX/IAA family 45 119 IPR033389 -
Rops7g00177 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 164 IPR003311 GO:0005634|GO:0006355
Rops7g00177 177 ProSiteProfiles PB1 domain profile. 79 162 IPR000270 GO:0005515
Rops7g00177 177 FunFam Auxin-responsive protein 74 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00177 Rops-Chr7 2545535 2549622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00177 75 177 B3 DNA Binding Superfamily AT4G23980 36.893 9.57e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops7g00177 AUX_IAA 6.3e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00177 K14484 - gmx:100811879 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00177 7 2545535 2549622 Rops7g00177 7 2545535 2549622 ECH
Rops4g02185 4 48285495 48288925 Rops7g00177 7 2545535 2549622 PCT