Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00176 ATGTCACCACCACAAAGTGGCATCCACTCATCGGAATCTGAAGCTGTTGATTGTAACTTGAAGGAAACTGAGCTCACCCTTGGCCTTCCCGGTACCAAAACTGGCACAAAACGTGGCTTCTCAGACACCGTTGATCTTCATCTTGGCACCTCAAAGAATGCTTCACCCAAGGCACACGTGGTGGGGTGGCCACCGGTGAGGGCAAGTAGGAAGAATGTGATGAAGAGTTGCAAGTATGTGAAGGTAGCGGTTGATGGAGCTCCATATTTAAGAAAAGTGGATCTTGAAATGTATGAGAGCTATGAGAATCTGCTGAGGGCATTAGAGACCATGTTTGGTTGCTTAACCATTCGTAATCATTCGATGAATGAGAGGAAACTCATGGACCCTGGAAATGGGATTGAATACATGCCCACTTATGAGGACAACGATGGTGATTGGATGTTGGTTGGGGACGTACCATGGAAGATGTTTGTTCAATCGTGCAAGAGGATAAGGCTTATGATTAGCTCAGAGGCCATGGACTTAGGTCCGAAGAATTCTTCCAAATGTACGGGCTCCAGTTAG 567 0.4656 MSPPQSGIHSSESEAVDCNLKETELTLGLPGTKTGTKRGFSDTVDLHLGTSKNASPKAHVVGWPPVRASRKNVMKSCKYVKVAVDGAPYLRKVDLEMYESYENLLRALETMFGCLTIRNHSMNERKLMDPGNGIEYMPTYEDNDGDWMLVGDVPWKMFVQSCKRIRLMISSEAMDLGPKNSSKCTGSS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00176 188 Gene3D - 71 182 - -
Rops7g00176 188 FunFam Auxin-responsive protein 72 180 - -
Rops7g00176 188 ProSiteProfiles PB1 domain profile. 77 172 IPR000270 GO:0005515
Rops7g00176 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 173 IPR003311 GO:0005634|GO:0006355
Rops7g00176 188 Pfam AUX/IAA family 50 179 IPR033389 -
Rops7g00176 188 SUPERFAMILY CAD & PB1 domains 69 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00176 Rops-Chr7 2529383 2530867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00176 67 180 B3 DNA Binding Superfamily AT1G59750 30.702 4.12e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops7g00176 AUX_IAA 1.3e-46 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00176 7 2529383 2530867 Rops7g00176 7 2529383 2530867 ECH