Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00156 ATGAGCATGAATGGCGAGTCCAGCAGAAACATGGAAAGAGAAACATACCCTTGCCCACATTTCAAGAAACCCAAAATATCAGCAACAGTGGCAACACCTATTAATCCTAACTTGAAGATGAAGACTCAGCTGTGCAGAAGGTTCAGGCATGGTGTGTGTTTTCTTGGGTCCCAATGCAACTACGCTCATGGATTCGAGGAGCTTAGACGCCCGACGACGTCGTTTCAAGAACCCAGACCCAAACTCTGCAGAATGTTCTCTCAGAACAAACACTGCACCTATGGGCACGCCTGTCGTTTCCTTCATTCTACCGTTGCTTCCCCAAACAACTGGCACTCCCAGATTAAAGGCTATTCTTCATTTGGAAACGTTTCTCGTCAATCACAACTAGGGAAACTAGATGGCTACTCTTCTGCAGAATACAAGATGATGCAGACTTCTACTGCTGCTACAATTGATGGCTACTCCTCTGCAGAATACAGGACAATGCAAACTTCTACTGCTGCTACAAATGCCTCTACCAGCATATTGGGACCTAGCTCTTTACATAAGAATGAACCGTATGGTGTGAAATGCATATTCAAGACAACTGAACTACAAAAGATCAGTCGCATCTATGCTGATTGGATTTAA 633 0.4439 MSMNGESSRNMERETYPCPHFKKPKISATVATPINPNLKMKTQLCRRFRHGVCFLGSQCNYAHGFEELRRPTTSFQEPRPKLCRMFSQNKHCTYGHACRFLHSTVASPNNWHSQIKGYSSFGNVSRQSQLGKLDGYSSAEYKMMQTSTAATIDGYSSAEYRTMQTSTAATNASTSILGPSSLHKNEPYGVKCIFKTTELQKISRIYADWI* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00156 210 Gene3D - 35 70 - -
Rops7g00156 210 Gene3D - 78 105 - -
Rops7g00156 210 SMART c3hfinal6 77 104 IPR000571 GO:0046872
Rops7g00156 210 SMART c3hfinal6 39 65 IPR000571 GO:0046872
Rops7g00156 210 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 65 IPR000571 GO:0046872
Rops7g00156 210 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 80 103 IPR000571 GO:0046872
Rops7g00156 210 ProSiteProfiles Zinc finger C3H1-type profile. 77 105 IPR000571 GO:0046872
Rops7g00156 210 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Rops7g00156 210 SUPERFAMILY CCCH zinc finger 78 103 IPR036855 GO:0046872
Rops7g00156 210 SUPERFAMILY CCCH zinc finger 38 69 IPR036855 GO:0046872
Rops7g00156 210 PANTHER CCCH ZINC FINGER/TIS11-RELATED 32 153 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00156 41 103 C3H Transcription Factor Family AT1G68200 40.625 8.39e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops7g00156 zf-CCCH 8.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00156 - - cam:101493245 187.963