Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00138 ATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAACGCCATTGGGGCTCATGGGTTTCTGAGATTCGTCACCCCTTATTGAAAAGGAGGGTGTGGCTTGGAACATTTGATACTGCTGAAGAAGCAGCTAGAGCATATGATGAGGCAGCTATTTTGATGAATGGAAGAAACGCCAAAACTAACTTTCCAGTTACGGATAATCAAATGGGAAATCACAGTTCCACTTCATTCTTTTCCAAAACATTTTCTGCAGTTCTCAGTGCAAAGCTGAGGAAGTGTTGCAAGTCCCCTTCACCTTCCCTCACTTGCCTAAGGCTTGATGCAGAGAATTCCCACTTCGGGGTGTGGCAGAAGCGAGCAGGGCCTCGTTCTGAATCAAACTGGATCATGATGGTTGAGTTGGAAAGGAAGAATCATGGAGCTTCTGATTCAGAATTGTCAGTGCCAGACACACCAGAGAAGGTAAAACCAAAAGAAATCAACAATGGTTTAGATGAAGAGCAGAGGATTGCCTTGCAGATGATTGAAGAACTTCTGAATGGGAATTAA 549 0.4426 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMNGRNAKTNFPVTDNQMGNHSSTSFFSKTFSAVLSAKLRKCCKSPSPSLTCLRLDAENSHFGVWQKRAGPRSESNWIMMVELERKNHGASDSELSVPDTPEKVKPKEINNGLDEEQRIALQMIEELLNGN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00138 182 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Rops7g00138 182 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Rops7g00138 182 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Rops7g00138 182 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 128 - -
Rops7g00138 182 MobiDBLite consensus disorder prediction 139 158 - -
Rops7g00138 182 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Rops7g00138 182 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Rops7g00138 182 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Rops7g00138 182 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Rops7g00138 182 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Rops7g00138 182 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00138 Rops-Chr7 1930631 1931479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00138 1 182 AP2-EREBP Transcription Factor Family AT1G15360 61.000 4.19e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops7g00138 AP2 8.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00138 - - gmx:100796962 288.115