LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops7g00098	ATGTGGGGATTGAGCATAGCCTCCGACGAGGAGCCCAGGGAATCGTCGTCTTCGTCCTCTTTCTCCACTTCGTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACACGTGGCCTCATGCATCTCTTTCCCGACGATACCCCTTCTGCTCTTCCCGTTGGAAGGAAGCCACTGGCGTGTGTTGTTGGAGTGCCAAATCACATGACATATGCTGATTTCTGCCAGTTCTGTGGTTCTTTTATTCATCACATCTTAGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTCTGATTCGGTTTGACGAGCAAGAGTCTACTGACAGTTTCTACAAGCACTACAATGGCCGCCGTTTCTCTTCTCTCGAGGTTGAGGTGTGCCGTGTTTTTTTCACATTAGATGTACAGTACACTGGCTCCATTGAACATGCACAACCATCCATTGCTAGTTCTACTGAACAGCCTTCTTGTCCTGTCTGTCTTGAGCGATTAGATCAAGACACCGGTGGAATTCTTACTACTATATGCAATCATTCTTTCCATTGTTCTTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACCGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGCGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAACATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTCTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAGCTGAACGCTCACTGTGGGCATGCAGACCATGGCTGTGGAAGTTTCAGCTGTGAAGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTGGAAAACCAAAAATTGTACTTTGAATCCTTGTTACAAGATGTAAAAGAAGAAACTGAGAGAAAAATTTCCAATGCTGTTCAGAAGGCTGTCAGCCTTAAACAGCAGAAGATTCAGACCAAGATCGACAGATGTAACAAAGAGAAGAAATTTCTGGATGAACTTAATGAGAATCTTGTGAAAAATGAGGAGATTTGGAAAGCAAAGACACTTGAGATTGAAGAGAGGGAGAAAAAAGCTTTGAAACTGACAAATGATAGAATAATGGACCTGGAAAAGCAGCTTAGAGATCTGATGGTTTGTCTTGAGGGTGGGAAGACGGTAGAACAGCTACCCGTGTCAAATGAAATTAAAGATGGGACTGTCTTTGACGTTTCAAAAGAATCCAAGTCAACTAGTGGCTCTGAAGCTGGGAAGAAAAGCACAACAAAAGAATGA	1428	0.4265	MWGLSIASDEEPRESSSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPSALPVGRKPLACVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDGMEDQYSVLIRFDEQESTDSFYKHYNGRRFSSLEVEVCRVFFTLDVQYTGSIEHAQPSIASSTEQPSCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCGHADHGCGSFSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQDVKEETERKISNAVQKAVSLKQQKIQTKIDRCNKEKKFLDELNENLVKNEEIWKAKTLEIEEREKKALKLTNDRIMDLEKQLRDLMVCLEGGKTVEQLPVSNEIKDGTVFDVSKESKSTSGSEAGKKSTTKE*	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops7g00098	475	CDD	RRM_BRAP2_like	62	142	-	-
	Rops7g00098	475	ProSiteProfiles	Zinc finger UBP-type profile.	197	290	IPR001607	GO:0008270
	Rops7g00098	475	SMART	Zf_UBP_1	213	262	IPR001607	GO:0008270
	Rops7g00098	475	PANTHER	BRCA1-ASSOCIATED PROTEIN	9	472	-	-
	Rops7g00098	475	SUPERFAMILY	RING/U-box	179	278	-	-
	Rops7g00098	475	SMART	ring_2	163	202	IPR001841	-
	Rops7g00098	475	Pfam	Zn-finger in ubiquitin-hydrolases and other protein	214	273	IPR001607	GO:0008270
	Rops7g00098	475	MobiDBLite	consensus disorder prediction	10	24	-	-
	Rops7g00098	475	Coils	Coil	346	366	-	-
	Rops7g00098	475	ProSiteProfiles	Zinc finger RING-type profile.	163	203	IPR001841	-
	Rops7g00098	475	MobiDBLite	consensus disorder prediction	1	24	-	-
	Rops7g00098	475	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	146	205	IPR013083	-
	Rops7g00098	475	MobiDBLite	consensus disorder prediction	454	475	-	-
	Rops7g00098	475	CDD	RING-H2_BRAP2	161	204	IPR047243	-
	Rops7g00098	475	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	206	285	IPR013083	-
	Rops7g00098	475	Coils	Coil	372	392	-	-
	Rops7g00098	475	Pfam	Ring finger domain	162	203	IPR001841	-
	Rops7g00098	475	Pfam	BRCA1-associated protein 2	54	150	IPR011422	-
	Rops7g00098	475	Coils	Coil	404	424	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops7g00098	Rops-Chr7	1451932	1455113	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops7g00098	159	203	C3H Transcription Factor Family	AT1G72220	46.809	4.96e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops7g00098	K10632		-	gmx:100794688	841.647