Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00098 ATGTGGGGATTGAGCATAGCCTCCGACGAGGAGCCCAGGGAATCGTCGTCTTCGTCCTCTTTCTCCACTTCGTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACACGTGGCCTCATGCATCTCTTTCCCGACGATACCCCTTCTGCTCTTCCCGTTGGAAGGAAGCCACTGGCGTGTGTTGTTGGAGTGCCAAATCACATGACATATGCTGATTTCTGCCAGTTCTGTGGTTCTTTTATTCATCACATCTTAGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTCTGATTCGGTTTGACGAGCAAGAGTCTACTGACAGTTTCTACAAGCACTACAATGGCCGCCGTTTCTCTTCTCTCGAGGTTGAGGTGTGCCGTGTTTTTTTCACATTAGATGTACAGTACACTGGCTCCATTGAACATGCACAACCATCCATTGCTAGTTCTACTGAACAGCCTTCTTGTCCTGTCTGTCTTGAGCGATTAGATCAAGACACCGGTGGAATTCTTACTACTATATGCAATCATTCTTTCCATTGTTCTTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACCGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGCGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAACATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTCTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAGCTGAACGCTCACTGTGGGCATGCAGACCATGGCTGTGGAAGTTTCAGCTGTGAAGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTGGAAAACCAAAAATTGTACTTTGAATCCTTGTTACAAGATGTAAAAGAAGAAACTGAGAGAAAAATTTCCAATGCTGTTCAGAAGGCTGTCAGCCTTAAACAGCAGAAGATTCAGACCAAGATCGACAGATGTAACAAAGAGAAGAAATTTCTGGATGAACTTAATGAGAATCTTGTGAAAAATGAGGAGATTTGGAAAGCAAAGACACTTGAGATTGAAGAGAGGGAGAAAAAAGCTTTGAAACTGACAAATGATAGAATAATGGACCTGGAAAAGCAGCTTAGAGATCTGATGGTTTGTCTTGAGGGTGGGAAGACGGTAGAACAGCTACCCGTGTCAAATGAAATTAAAGATGGGACTGTCTTTGACGTTTCAAAAGAATCCAAGTCAACTAGTGGCTCTGAAGCTGGGAAGAAAAGCACAACAAAAGAATGA 1428 0.4265 MWGLSIASDEEPRESSSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPSALPVGRKPLACVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDGMEDQYSVLIRFDEQESTDSFYKHYNGRRFSSLEVEVCRVFFTLDVQYTGSIEHAQPSIASSTEQPSCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCGHADHGCGSFSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQDVKEETERKISNAVQKAVSLKQQKIQTKIDRCNKEKKFLDELNENLVKNEEIWKAKTLEIEEREKKALKLTNDRIMDLEKQLRDLMVCLEGGKTVEQLPVSNEIKDGTVFDVSKESKSTSGSEAGKKSTTKE* 476
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00098 475 CDD RRM_BRAP2_like 62 142 - -
Rops7g00098 475 ProSiteProfiles Zinc finger UBP-type profile. 197 290 IPR001607 GO:0008270
Rops7g00098 475 SMART Zf_UBP_1 213 262 IPR001607 GO:0008270
Rops7g00098 475 PANTHER BRCA1-ASSOCIATED PROTEIN 9 472 - -
Rops7g00098 475 SUPERFAMILY RING/U-box 179 278 - -
Rops7g00098 475 SMART ring_2 163 202 IPR001841 -
Rops7g00098 475 Pfam Zn-finger in ubiquitin-hydrolases and other protein 214 273 IPR001607 GO:0008270
Rops7g00098 475 MobiDBLite consensus disorder prediction 10 24 - -
Rops7g00098 475 Coils Coil 346 366 - -
Rops7g00098 475 ProSiteProfiles Zinc finger RING-type profile. 163 203 IPR001841 -
Rops7g00098 475 MobiDBLite consensus disorder prediction 1 24 - -
Rops7g00098 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 205 IPR013083 -
Rops7g00098 475 MobiDBLite consensus disorder prediction 454 475 - -
Rops7g00098 475 CDD RING-H2_BRAP2 161 204 IPR047243 -
Rops7g00098 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 285 IPR013083 -
Rops7g00098 475 Coils Coil 372 392 - -
Rops7g00098 475 Pfam Ring finger domain 162 203 IPR001841 -
Rops7g00098 475 Pfam BRCA1-associated protein 2 54 150 IPR011422 -
Rops7g00098 475 Coils Coil 404 424 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops7g00098 Rops-Chr7 1451932 1455113 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00098 159 203 C3H Transcription Factor Family AT1G72220 46.809 4.96e-07 50.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00098 K10632 - gmx:100794688 841.647