Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops7g00098 | ATGTGGGGATTGAGCATAGCCTCCGACGAGGAGCCCAGGGAATCGTCGTCTTCGTCCTCTTTCTCCACTTCGTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACACGTGGCCTCATGCATCTCTTTCCCGACGATACCCCTTCTGCTCTTCCCGTTGGAAGGAAGCCACTGGCGTGTGTTGTTGGAGTGCCAAATCACATGACATATGCTGATTTCTGCCAGTTCTGTGGTTCTTTTATTCATCACATCTTAGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTCTGATTCGGTTTGACGAGCAAGAGTCTACTGACAGTTTCTACAAGCACTACAATGGCCGCCGTTTCTCTTCTCTCGAGGTTGAGGTGTGCCGTGTTTTTTTCACATTAGATGTACAGTACACTGGCTCCATTGAACATGCACAACCATCCATTGCTAGTTCTACTGAACAGCCTTCTTGTCCTGTCTGTCTTGAGCGATTAGATCAAGACACCGGTGGAATTCTTACTACTATATGCAATCATTCTTTCCATTGTTCTTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACCGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGCGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAACATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTCTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAGCTGAACGCTCACTGTGGGCATGCAGACCATGGCTGTGGAAGTTTCAGCTGTGAAGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTGGAAAACCAAAAATTGTACTTTGAATCCTTGTTACAAGATGTAAAAGAAGAAACTGAGAGAAAAATTTCCAATGCTGTTCAGAAGGCTGTCAGCCTTAAACAGCAGAAGATTCAGACCAAGATCGACAGATGTAACAAAGAGAAGAAATTTCTGGATGAACTTAATGAGAATCTTGTGAAAAATGAGGAGATTTGGAAAGCAAAGACACTTGAGATTGAAGAGAGGGAGAAAAAAGCTTTGAAACTGACAAATGATAGAATAATGGACCTGGAAAAGCAGCTTAGAGATCTGATGGTTTGTCTTGAGGGTGGGAAGACGGTAGAACAGCTACCCGTGTCAAATGAAATTAAAGATGGGACTGTCTTTGACGTTTCAAAAGAATCCAAGTCAACTAGTGGCTCTGAAGCTGGGAAGAAAAGCACAACAAAAGAATGA | 1428 | 0.4265 | MWGLSIASDEEPRESSSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPSALPVGRKPLACVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDGMEDQYSVLIRFDEQESTDSFYKHYNGRRFSSLEVEVCRVFFTLDVQYTGSIEHAQPSIASSTEQPSCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCGHADHGCGSFSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQDVKEETERKISNAVQKAVSLKQQKIQTKIDRCNKEKKFLDELNENLVKNEEIWKAKTLEIEEREKKALKLTNDRIMDLEKQLRDLMVCLEGGKTVEQLPVSNEIKDGTVFDVSKESKSTSGSEAGKKSTTKE* | 476 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops7g00098 | 475 | CDD | RRM_BRAP2_like | 62 | 142 | - | - | |
Rops7g00098 | 475 | ProSiteProfiles | Zinc finger UBP-type profile. | 197 | 290 | IPR001607 | GO:0008270 | |
Rops7g00098 | 475 | SMART | Zf_UBP_1 | 213 | 262 | IPR001607 | GO:0008270 | |
Rops7g00098 | 475 | PANTHER | BRCA1-ASSOCIATED PROTEIN | 9 | 472 | - | - | |
Rops7g00098 | 475 | SUPERFAMILY | RING/U-box | 179 | 278 | - | - | |
Rops7g00098 | 475 | SMART | ring_2 | 163 | 202 | IPR001841 | - | |
Rops7g00098 | 475 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 214 | 273 | IPR001607 | GO:0008270 | |
Rops7g00098 | 475 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
Rops7g00098 | 475 | Coils | Coil | 346 | 366 | - | - | |
Rops7g00098 | 475 | ProSiteProfiles | Zinc finger RING-type profile. | 163 | 203 | IPR001841 | - | |
Rops7g00098 | 475 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Rops7g00098 | 475 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 205 | IPR013083 | - | |
Rops7g00098 | 475 | MobiDBLite | consensus disorder prediction | 454 | 475 | - | - | |
Rops7g00098 | 475 | CDD | RING-H2_BRAP2 | 161 | 204 | IPR047243 | - | |
Rops7g00098 | 475 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 206 | 285 | IPR013083 | - | |
Rops7g00098 | 475 | Coils | Coil | 372 | 392 | - | - | |
Rops7g00098 | 475 | Pfam | Ring finger domain | 162 | 203 | IPR001841 | - | |
Rops7g00098 | 475 | Pfam | BRCA1-associated protein 2 | 54 | 150 | IPR011422 | - | |
Rops7g00098 | 475 | Coils | Coil | 404 | 424 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops7g00098 | Rops-Chr7 | 1451932 | 1455113 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops7g00098 | 159 | 203 | C3H Transcription Factor Family | AT1G72220 | 46.809 | 4.96e-07 | 50.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops7g00098 | K10632 | - | gmx:100794688 | 841.647 |