Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00097 ATGGAGGAGAACCCGTGGGGAAAATGGACTTCCGATTTGGGAATGGATGATGATGTCAATGGATGCTTGTGCCACACAAACACTTTCGATGAAGAGTTCCTCAGAGATATCTTGCAGCAGCCACAAGCGCCAGCTGTTAACACCACCGTTAGTGGTTCATTATTCGGCCAGACAAGTGGTGGAGACATGATGATGAATAACAACAACTCATCCATCATCTCTCATTCTCATAATCAACAACATGTTGCAGAAAAGCCAACCACATCTCCAACATCCTACATTCTCTCTTTTGACAAATCCACTGCCTTGTTACCAACTGAACATCATTCTTGGAAAGAGGTAATTTCTCAACCCCAGTTGGGCAATCACCCCAAAGATTCTTTGCCTTTGTCCTCATCAAGACCCACTCAAGGGACCAAGAAGACTCGAAGCGCTTCTGAGACACTGGATCACATTATGTCTGAGAGAAATAGGAGACAGGAACTCACAAGGAAGTTCATTGCACTTTCAGCCACTATTCCTGGCTTGAAGAAGATGGACAAGGCTCATGTACTAAGAGAAGCTATCAATTATGTGAAACACCTTCAAGAACATGTAAAAGAGCTAGAAGAAGGTATCCAGAAGAACGGTGTTGAATCAGTGATTACCATAACAAGATCTCATCTCTGCATTGATGATGACACTGCTTTCAGTGAAACGGATAATGATGAATGCTATGGGCCCAATGAAGCACTTCCTGAAGTTGAAGCAAGAGTCCTAGGTAAGGAAATGTTAATCAAAATTCACTGTGTGAAACAAAAGGGCATTCTGCTCAAAGTAATGTCCCAGCTTGAGAGTCTTCATCTCTCAATATCAACTAGCAACGTCTTGCCATTTGGGAACACTCTTGACATCACCATCATTGCTCAGATGGGTGACAAATACAACTTGATAGTGAAGGATCTAGTGAAAAAACTGAGACTAGTGGCTACGCAGCAGGCATGTGATGTACAACAATGA 999 0.4274 MEENPWGKWTSDLGMDDDVNGCLCHTNTFDEEFLRDILQQPQAPAVNTTVSGSLFGQTSGGDMMMNNNNSSIISHSHNQQHVAEKPTTSPTSYILSFDKSTALLPTEHHSWKEVISQPQLGNHPKDSLPLSSSRPTQGTKKTRSASETLDHIMSERNRRQELTRKFIALSATIPGLKKMDKAHVLREAINYVKHLQEHVKELEEGIQKNGVESVITITRSHLCIDDDTAFSETDNDECYGPNEALPEVEARVLGKEMLIKIHCVKQKGILLKVMSQLESLHLSISTSNVLPFGNTLDITIIAQMGDKYNLIVKDLVKKLRLVATQQACDVQQ* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00097 332 Pfam Helix-loop-helix DNA-binding domain 151 196 IPR011598 GO:0046983
Rops7g00097 332 MobiDBLite consensus disorder prediction 116 147 - -
Rops7g00097 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 212 IPR036638 GO:0046983
Rops7g00097 332 MobiDBLite consensus disorder prediction 116 143 - -
Rops7g00097 332 Gene3D - 137 210 IPR036638 GO:0046983
Rops7g00097 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Rops7g00097 332 SMART finulus 152 201 IPR011598 GO:0046983
Rops7g00097 332 Coils Coil 185 205 - -
Rops7g00097 332 PANTHER BHLH TRANSCRIPTION FACTOR 58 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00097 Rops-Chr7 1447369 1449702 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00097 90 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 44.726 4.63e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g00097 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00097 - - gmx:100809223 385.185